RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 IL18Q14116 193 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 MAP1SQ66K74 1059 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-201ENST00000303395 CCBE1Q6UXH8 406 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-201ENST00000303395 MBOAT1Q6ZNC8 495 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 SLC16A9Q7RTY1 509 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 NRSN1Q8IZ57 195 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 DEFB106AQ8N104 65 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 SUSD6Q92537 303 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 RAD51AP1Q96B01 352 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 COQ8BQ96D53 544 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 MAP6Q96JE9 813 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 PFDN5Q99471 154 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 GAS2L1Q99501 681 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-201ENST00000303395 TTYH2Q9BSA4 534 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 ASPNQ9BXN1 380 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 MTG2Q9H4K7 406 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 TMEM27Q9HBJ8 222 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 PIM2Q9P1W9 311 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 JUNDP17535 347 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 GBX2P52951 348 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-201ENST00000303395 VLDLRP98155 873 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 NIPAL4Q0D2K0 466 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 MLLT11Q13015 90 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-201ENST00000303395 SGCBQ16585 318 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 REEP3Q6NUK4 255 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 ABHD15Q6UXT9 468 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 TCTE3Q8IZS6 198 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 ANKK1Q8NFD2 765 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 SMARCD2Q92925 531 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 PNPLA2Q96AD5 504 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 C11orf24Q96F05 449 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-201ENST00000303395 S100A16Q96FQ6 103 aaKnown RBP5.07□□□□□ -1.6
SCN1A-201ENST00000303395 ALG9Q9H6U8 611 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 LIN7BQ9HAP6 207 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 MYOZ2Q9NPC6 264 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 PCDHGA6Q9Y5G7 932 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 ETV7Q9Y603 341 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 MYO5AQ9Y4I1 1855 aaKnown RBP5.07□□□□□ -1.6
SCN1A-201ENST00000303395 CCDC85CA6NKD9 419 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 H3BMQ9 156 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 CYB561D2O14569 222 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 UBE2MP61081 183 aaKnown RBP5.07□□□□□ -1.6
SCN1A-201ENST00000303395 CRADDP78560 199 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 ST3GAL3Q11203 375 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 BTBD16Q32M84 506 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 TRIM46Q7Z4K8 759 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 GPR65Q8IYL9 337 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 OR2AJ1Q8NGZ0 328 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 MFSD8Q8NHS3 518 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 KCTD4Q8WVF5 259 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 SNAPC3Q92966 411 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 BPIFA2Q96DR5 249 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 SGTBQ96EQ0 304 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 CPVLQ9H3G5 476 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 PIGMQ9H3S5 423 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 SMOC2Q9H3U7 446 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 SCPEP1Q9HB40 452 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 XPNPEP1Q9NQW7 623 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 MS4A12Q9NXJ0 267 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 PPT2Q9UMR5 302 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 C2orf78A6NCI8 922 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 MT-CO2P00403 227 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 PAHP00439 452 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 BUD31P41223 144 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-201ENST00000303395 INHBEP58166 350 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 FOXK1P85037 733 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 BCL2L1Q07817 233 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 SMTNL2Q2TAL5 461 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 C3orf38Q5JPI3 329 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 PERM1Q5SV97 790 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 MANEALQ5VSG8 457 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 PRAMEF17Q5VTA0 474 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 CES3Q6UWW8 571 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 SAPCD2Q86UD0 394 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 TERB2Q8NHR7 220 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 PPTC7Q8NI37 304 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 DOHHQ9BU89 302 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 ELAC1Q9H777 363 aaKnown RBP5.07□□□□□ -1.6
SCN1A-201ENST00000303395 PRDM9Q9NQV7 894 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 SNED1Q8TER0 1413 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 GLYATL1P3A0A0U1RQE8 302 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 ATG13O75143 517 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 GAAP10253 952 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 CD1EP15812 388 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 CDK2P24941 298 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 CERS1P27544 350 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 SPAM1P38567 509 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 OGDHQ02218 1023 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 DUSP4Q13115 394 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 ITPK1Q13572 414 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 TLR1Q15399 786 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 SEZ6Q53EL9 994 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 SLC30A10Q6XR72 485 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 FAM183BPQ6ZVS7 135 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 PPP1R13LQ8WUF5 828 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 MCMBPQ9BTE3 642 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 ASB6Q9NWX5 421 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 LYARQ9NX58 379 aaKnown RBP5.07□□□□□ -1.6
SCN1A-201ENST00000303395 ZNF224Q9NZL3 707 aa5.07□□□□□ -1.6
SCN1A-201ENST00000303395 CKAP5Q14008 2032 aa5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms