RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 AMHR2Q16671 573 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 LAPTM4BQ86VI4 370 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 JAZF1Q86VZ6 243 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 ZSWIM9Q86XI8 627 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 SNX29P2Q8IUI4 249 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 RBFAQ8N0V3 343 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 ZNF439Q8NDP4 499 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 SAT2Q96F10 170 aaPredicted RBP6.19□□□□□ -1.42
VPS35-201ENST00000299138 SPATA5L1Q9BVQ7 753 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 CSNK1G1Q9HCP0 422 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 C11orf16Q9NQ32 467 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 LRFN1Q9P244 771 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 SERTM1A2A2V5 107 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 KCNJ13O60928 360 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 OR2B3O76000 313 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 DDNO94850 711 aaPredicted RBP6.19□□□□□ -1.42
VPS35-201ENST00000299138 CTPS1P17812 591 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 NR4A2P43354 598 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 SOX10P56693 466 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 VLDLRP98155 873 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 COL28A1Q2UY09 1125 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 SEZ6Q53EL9 994 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 LRIF1Q5T3J3 769 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 NUDT18Q6ZVK8 323 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 CHST15Q7LFX5 561 aaPredicted RBP6.19□□□□□ -1.42
VPS35-201ENST00000299138 CLDN22Q8N7P3 220 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 ZNF248Q8NDW4 579 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 OR10H5Q8NGA6 315 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 RIT1Q92963 219 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 COQ8BQ96D53 544 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 WDFY2Q96P53 400 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 PLEKHA1Q9HB21 404 aa6.19□□□□□ -1.42
VPS35-201ENST00000299138 ATP6AP2A0A1C7CYW4 349 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 SUV39H1O43463 412 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 LGI1O95970 557 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 HOXD8P13378 290 aaPredicted RBP6.18□□□□□ -1.42
VPS35-201ENST00000299138 CD36P16671 472 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 CAPN3P20807 821 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 HLA-DMAP28067 261 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 SLC35A2P78381 396 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 CHAF1BQ13112 559 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 BAMBIQ13145 260 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 ZNF630Q2M218 657 aaPredicted RBP6.18□□□□□ -1.42
VPS35-201ENST00000299138 TRMT11Q7Z4G4 463 aaKnown RBP6.18□□□□□ -1.42
VPS35-201ENST00000299138 DEDD2Q8WXF8 326 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 QRFPRQ96P65 431 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 ZNF300Q96RE9 604 aaPredicted RBP6.18□□□□□ -1.42
VPS35-201ENST00000299138 ATOH8Q96SQ7 321 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 CEP41Q9BYV8 373 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 FAM117AQ9C073 453 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 MIR1-1HGQ9H1L0 117 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 ABHD16BQ9H3Z7 469 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 ZNF358Q9NW07 568 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 TMEM248Q9NWD8 314 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 MTX2O75431 263 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 NR2C1P13056 603 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 SLC2A5P22732 501 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 TRIM23P36406 574 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 ISL1P61371 349 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 CACNG1Q06432 222 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 SLC13A2Q13183 592 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 GRIK4Q16099 956 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 PFKFB4Q16877 469 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 RABL3Q5HYI8 236 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 KDELC1Q6UW63 502 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 ADGRG2Q8IZP9 1017 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 OR2AP1Q8NGE2 309 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 OR8S1Q8NH09 359 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 DYNC2LI1Q8TCX1 351 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 SLCO4A1Q96BD0 722 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 TMIGD2Q96BF3 282 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 PCYT2Q99447 389 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 TCF7L1Q9HCS4 588 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 ACTR10Q9NZ32 417 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 KLQ9UEF7 1012 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 PCTPQ9UKL6 214 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 CYP8B1Q9UNU6 501 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 LRATO95237 230 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 PROS1P07225 676 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 SFTPBP07988 381 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 GSTM3P21266 225 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 MATN1P21941 496 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 CYP2A13Q16696 494 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 DUSP28Q4G0W2 176 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 NOMO2Q5JPE7 1267 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 SYVN1Q86TM6 617 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 TBX5Q99593 518 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 FAM83CQ9BQN1 747 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 ACTR6Q9GZN1 396 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 HAPLN2Q9GZV7 340 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 LHPPQ9H008 270 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 FOLH1BQ9HBA9 442 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 LRTM1Q9HBL6 345 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 TNFRSF10DQ9UBN6 386 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 LSM7Q9UK45 103 aaKnown RBP6.18□□□□□ -1.42
VPS35-201ENST00000299138 DLGAP4Q9Y2H0 992 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 SMIM30A4D0T7 59 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 OR6C75A6NL08 312 aa6.18□□□□□ -1.42
VPS35-201ENST00000299138 GTPBP1O00178 669 aaKnown RBP6.18□□□□□ -1.42
VPS35-201ENST00000299138 NFKBIEO00221 500 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms