RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 SIPA1Q96FS4 1042 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 MS4A3Q96HJ5 214 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 SERPINB11Q96P15 392 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 RACGAP1Q9H0H5 632 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 MROH8Q9H579 483 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 LATS2Q9NRM7 1088 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 STUB1Q9UNE7 303 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 SSR3Q9UNL2 185 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 A0A0A6YYJ9 748 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 LANCL1O43813 399 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 FAM157BP0CG42 384 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 RPS25P62851 125 aaKnown RBP12.92□□□□□ -0.34
SKA3-201ENST00000298260 SEMG2Q02383 582 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 EXOSC2Q13868 293 aaKnown RBP12.92□□□□□ -0.34
SKA3-201ENST00000298260 HKDC1Q2TB90 917 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 DDI2Q5TDH0 399 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 TMEM81Q6P7N7 255 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 ARSKQ6UWY0 536 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 TRIM46Q7Z4K8 759 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 TEX26Q8N6G2 289 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.92□□□□□ -0.34
SKA3-201ENST00000298260 DNAJA4Q8WW22 397 aaPredicted RBP12.92□□□□□ -0.34
SKA3-201ENST00000298260 CSNK1G1Q9HCP0 422 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 SLAMF7Q9NQ25 335 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 ABCC13Q9NSE7 274 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 PIKFYVEQ9Y2I7 2098 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 IQCMA0A1B0GVH7 501 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 HYKKA2RU49 373 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 SLC35F4A4IF30 521 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 LINC00862A6NCI5 91 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 RFPL3O75679 317 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 PDE9AO76083 593 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 PAHP00439 452 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 WNT3P56703 355 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 CDC42P60953 191 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 RPL6Q02878 288 aaKnown RBP12.92□□□□□ -0.34
SKA3-201ENST00000298260 GAB1Q13480 694 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 MICAQ29983 383 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 ZXDCQ2QGD7 858 aaPredicted RBP12.92□□□□□ -0.34
SKA3-201ENST00000298260 TIGD3Q6B0B8 471 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 TAPT1Q6NXT6 567 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 IQCF1Q8N6M8 205 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 GDPD1Q8N9F7 314 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 LHFPL5Q8TAF8 219 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 BRI3BPQ8WY22 251 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 KCNJ9Q92806 393 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 SLC6A18Q96N87 628 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 TRIB3Q96RU7 358 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 KATNB1Q9BVA0 655 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 CD244Q9BZW8 370 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 HEXA-AS1Q9H8Q6 139 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 BEX1Q9HBH7 125 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 PRDM5Q9NQX1 630 aaPredicted RBP12.92□□□□□ -0.34
SKA3-201ENST00000298260 TLR8Q9NR97 1041 aaKnown RBP12.92□□□□□ -0.34
SKA3-201ENST00000298260 CLN6Q9NWW5 311 aa12.92□□□□□ -0.34
SKA3-201ENST00000298260 PRAMEF33A0A0G2JMD5 474 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 DVL2O14641 736 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 PRRG1O14668 218 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 PRAMEF10O60809 474 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 MPC2O95563 127 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 ETFAP13804 333 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 COX7A2P14406 83 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 EPORP19235 508 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 LHX1P48742 406 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 CPT1AP50416 773 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 CLCN4P51793 760 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 RHAGQ02094 409 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 TEKQ02763 1124 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 SERINC3Q13530 473 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 DUOXA1Q1HG43 343 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 PTRHD1Q6GMV3 140 aaKnown RBP12.91□□□□□ -0.34
SKA3-201ENST00000298260 ADNP2Q6IQ32 1131 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 FAM180BQ6P0A1 224 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 FAM151BQ6UXP7 276 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 SHFQ7M4L6 423 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 C2orf69Q8N8R5 385 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 FAM181AQ8N9Y4 354 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 BEST4Q8NFU0 473 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 OR11H7Q8NGC8 314 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 HYLS1Q96M11 299 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 NELL2Q99435 816 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 KCNN2Q9H2S1 579 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 SPNS1Q9H2V7 528 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 RETREG1Q9H6L5 497 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 ZFP64Q9NPA5 681 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 ZC4H2Q9NQZ6 224 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 DIABLOQ9NR28 239 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 POFUT2Q9Y2G5 429 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 SPIN1Q9Y657 262 aaPredicted RBP12.91□□□□□ -0.34
SKA3-201ENST00000298260 ZSWIM8A7E2V4 1837 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 DOCK4Q8N1I0 1966 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 XIRP2A4UGR9 3374 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 LOC105369274A0A096LPK9 316 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 C2orf81A6NN90 581 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 EPB42P16452 691 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 CTPS1P17812 591 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 GPX2P18283 190 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 TALDO1P37837 337 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 PBX3P40426 434 aa12.91□□□□□ -0.34
SKA3-201ENST00000298260 CRATP43155 626 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms