RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 CTC1Q2NKJ3 1217 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 PLEKHN1Q494U1 663 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-201ENST00000295550 LIPKQ5VXJ0 399 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 HFE2Q6ZVN8 426 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 KCNN1Q92952 543 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 BIN3Q9NQY0 253 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 TUBG2Q9NRH3 451 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 PAK1IP1Q9NWT1 392 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-201ENST00000295550 HEBP2Q9Y5Z4 205 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 PTPRZ1P23471 2315 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-201ENST00000295550 A0A1B0GV50 99 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 ZNF670-ZNF695F2Z2N8 137 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 RASAL1O95294 804 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 IFNA17P01571 189 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 HTR1AP08908 422 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 ALDH3B2P48448 385 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 NFE2L1Q14494 772 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 SPIN4Q56A73 249 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 WDTC1Q8N5D0 677 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 SCAMP5Q8TAC9 235 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 ELP5Q8TE02 316 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 LCN9Q8WX39 176 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 ZUFSPQ96AP4 578 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 ADAD1Q96M93 576 aaKnown RBP9.53□□□□□ -0.88
COL6A3-201ENST00000295550 ABCB8Q9NUT2 735 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 RUVBL1Q9Y265 456 aaKnown RBP9.53□□□□□ -0.88
COL6A3-201ENST00000295550 MDFIC2A0A1B0GVS7 189 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 HYKKA2RU49 373 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 NPIPA5E9PKD4 350 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 GTF2F2P13984 249 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 RAB4AP20338 218 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 RPL35P42766 123 aaKnown RBP9.53□□□□□ -0.88
COL6A3-201ENST00000295550 ZNF696Q9H7X3 374 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 NPIPA1Q9UND3 350 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 CACNA1IQ9P0X4 2223 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 A0A1B0GVT2 93 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 A0A1W2PP18 115 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 AHSGP02765 367 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 RABGGTBP53611 331 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 FBXO15Q8NCQ5 510 aaPredicted RBP9.53□□□□□ -0.88
COL6A3-201ENST00000295550 NAXEQ8NCW5 288 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 MYOCQ99972 504 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 FGL1Q08830 312 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 ATP6AP1Q15904 470 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 HACD2Q6Y1H2 254 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 BEND4Q6ZU67 534 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 GPAT4Q86UL3 456 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 ZNF584Q8IVC4 421 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 OR7G2Q8NG99 324 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 ARL6IP5O75915 188 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 CAPN3P20807 821 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 RBMXP38159 391 aaKnown RBP9.53□□□□□ -0.88
COL6A3-201ENST00000295550 NSG1P42857 185 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 RAB39AQ14964 217 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 SSX2Q16385 188 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 SLC36A4Q6YBV0 504 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 SLC2A13Q96QE2 648 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 CGREF1Q99674 301 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 HERPUD2Q9BSE4 406 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 SYT4Q9H2B2 425 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 LIN28AQ9H9Z2 209 aaKnown RBP9.53□□□□□ -0.88
COL6A3-201ENST00000295550 TIGARQ9NQ88 270 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 LAMP5Q9UJQ1 280 aa9.53□□□□□ -0.88
COL6A3-201ENST00000295550 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.52□□□□□ -0.88
COL6A3-201ENST00000295550 CAPN14A8MX76 684 aa9.52□□□□□ -0.88
COL6A3-201ENST00000295550 BCL2A1Q16548 175 aa9.52□□□□□ -0.88
COL6A3-201ENST00000295550 TMEM69Q5SWH9 247 aa9.52□□□□□ -0.88
COL6A3-201ENST00000295550 TMEM41AQ96HV5 264 aa9.52□□□□□ -0.88
COL6A3-201ENST00000295550 RNF121Q9H920 327 aa9.52□□□□□ -0.88
COL6A3-201ENST00000295550 TEX13CA0A0J9YWL9 993 aa9.52□□□□□ -0.88
COL6A3-201ENST00000295550 CSTBP04080 98 aaKnown RBP9.52□□□□□ -0.88
COL6A3-201ENST00000295550 OR4Q2P0C623 313 aa9.52□□□□□ -0.88
COL6A3-201ENST00000295550 RORAP35398 523 aa9.52□□□□□ -0.88
COL6A3-201ENST00000295550 ZNF367Q7RTV3 350 aa9.52□□□□□ -0.88
COL6A3-201ENST00000295550 WASF3Q9UPY6 502 aa9.52□□□□□ -0.88
COL6A3-201ENST00000295550 PCYT1BQ9Y5K3 369 aaPredicted RBP9.52□□□□□ -0.88
COL6A3-201ENST00000295550 A0A1W2PQ67 120 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 PCDH7O60245 1069 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 CREBL2O60519 120 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-201ENST00000295550 F7P08709 466 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-201ENST00000295550 CHRM1P11229 460 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-201ENST00000295550 AGTR1P30556 359 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 DLSTP36957 453 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 GRIA2P42262 883 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 PIM3Q86V86 326 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 RELTQ969Z4 430 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 SUSD3Q96L08 255 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 RAD9AQ99638 391 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 PDLIM7Q9NR12 457 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 CTPS2Q9NRF8 586 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 OR6C6A6NF89 314 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 H0YAE9 185 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 CAPZA1P52907 286 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 ST3GAL4Q11206 333 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 FGL2Q14314 439 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 MYNNQ9NPC7 610 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 SLC2A6Q9UGQ3 507 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 RALGAPA1Q6GYQ0 2036 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 INMT-MINDY4F8WBC2 141 aa9.52□□□□□ -0.89
COL6A3-201ENST00000295550 POLR1CO15160 346 aaPredicted RBP9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms