RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 VN1R5Q7Z5H4 357 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 ARRDC2Q8TBH0 407 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 DUS3LQ96G46 650 aaKnown RBP11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 NEURL2Q9BR09 285 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 GINS4Q9BRT9 223 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 TMEM138Q9NPI0 162 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 DCAF13Q9NV06 445 aaKnown RBP11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 EIF3KQ9UBQ5 218 aaKnown RBP11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 CD84Q9UIB8 345 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 SARDHQ9UL12 918 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 ENTPD4Q9Y227 616 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 DHRS7Q9Y394 339 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 WNT6Q9Y6F9 365 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 A0A1W2PRG6 482 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 AP3D1O14617 1153 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 MRPS14O60783 128 aaKnown RBP11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 SULT1C4O75897 302 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 GABARAPO95166 117 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 KLKB1P03952 638 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 EPCAMP16422 314 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 HOXD9P28356 352 aaPredicted RBP11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 MAD2L1BPQ15013 274 aaPredicted RBP11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 IRAK1BP1Q5VVH5 260 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 CAPN13Q6MZZ7 669 aaPredicted RBP11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 LETMD1Q6P1Q0 360 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 DPY19L3Q6ZPD9 716 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 GAREM2Q75VX8 874 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 GALNT7Q86SF2 657 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 CXorf40AQ8TE69 158 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 ZNF431Q8TF32 576 aaPredicted RBP11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 SMARCD2Q92925 531 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 WACQ9BTA9 647 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 ACAT2Q9BWD1 397 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 TMEM45AQ9NWC5 275 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 SLC22A14Q9Y267 594 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 TRBC2A0A5B9 178 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 CLCA1A8K7I4 914 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 ARNTLO00327 626 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 SOX14O95416 240 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 SRPRAP08240 638 aaKnown RBP11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 RPS17P08708 135 aaKnown RBP11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 PRSS56P0CW18 603 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 CKMT1AP12532 417 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 CLK3P49761 638 aaKnown RBP11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 FAM46DQ8NEK8 389 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 FCRL4Q96PJ5 515 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 SLC35A5Q9BS91 424 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 KCNN2Q9H2S1 579 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 GDE1Q9NZC3 331 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 ACTL7AQ9Y615 435 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 INMT-MINDY4F8WBC2 141 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 UBFD1O14562 309 aaKnown RBP11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 ERAL1O75616 437 aaKnown RBP11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 CPNE6O95741 557 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 PRLP01236 227 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 DNTTP04053 509 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 ELFN1P0C7U0 828 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 CASP3P42574 277 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 MAP2K3P46734 347 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 PSMD8P48556 350 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 FBXW4P57775 412 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 CDK6Q00534 326 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 SMN1Q16637 294 aaKnown RBP11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 IDNKQ5T6J7 187 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 MED27Q6P2C8 311 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 B3GNT8Q7Z7M8 397 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 PTRH1Q86Y79 214 aaKnown RBP11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 METTL4Q8N3J2 472 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 SIPA1Q96FS4 1042 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 CMTM7Q96FZ5 175 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 TMEM80Q96HE8 168 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 OR51E2Q9H255 320 aa11.09□□□□□ -0.63
CLSTN3-201ENST00000266546 PCDH7O60245 1069 aa11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 CRYZL1O95825 349 aa11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 RCVRNP35243 200 aa11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 WASP42768 502 aa11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 HSF2Q03933 536 aa11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 STEAP3Q658P3 488 aa11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 TBPL2Q6SJ96 375 aa11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 ZNF730Q6ZMV8 503 aa11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 RAVER1Q8IY67 606 aaKnown RBP11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 PARP16Q8N5Y8 322 aa11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 C1orf52Q8N6N3 182 aaKnown RBP11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 RFKQ969G6 155 aa11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 ZFP3Q96NJ6 502 aa11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 ATOH8Q96SQ7 321 aa11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 NUFIP1Q9UHK0 495 aaKnown RBP11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 CXorf51AA0A1B0GTR3 108 aa11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 HIDE1A8MVS5 230 aa11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 SELPLGQ14242 412 aa11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 ZNF267Q14586 743 aaPredicted RBP11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 SPHARQ15513 63 aa11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 TCTN1Q2MV58 587 aa11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 PTCHD3Q3KNS1 767 aa11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 CRB2Q5IJ48 1285 aa11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 SNAP47Q5SQN1 464 aa11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 LRRC66Q68CR7 880 aa11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 PSAPL1Q6NUJ1 521 aa11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 TNFAIP8L2Q6P589 184 aaPredicted RBP11.08□□□□□ -0.64
CLSTN3-201ENST00000266546 LILRA6Q6PI73 481 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms