RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 CYB5AP00167 134 aa10.36□□□□□ -0.75
CD44-201ENST00000263398 CELP19835 753 aa10.36□□□□□ -0.75
CD44-201ENST00000263398 SLC6A6P31641 620 aa10.36□□□□□ -0.75
CD44-201ENST00000263398 CD68P34810 354 aaPredicted RBP10.36□□□□□ -0.75
CD44-201ENST00000263398 APLP1P51693 650 aa10.36□□□□□ -0.75
CD44-201ENST00000263398 NRG3P56975 720 aa10.36□□□□□ -0.75
CD44-201ENST00000263398 ARPC4P59998 168 aa10.36□□□□□ -0.75
CD44-201ENST00000263398 SCRN3Q0VDG4 424 aa10.36□□□□□ -0.75
CD44-201ENST00000263398 KANK2Q63ZY3 851 aa10.36□□□□□ -0.75
CD44-201ENST00000263398 CEP68Q76N32 757 aa10.36□□□□□ -0.75
CD44-201ENST00000263398 CMTR2Q8IYT2 770 aaKnown RBP10.36□□□□□ -0.75
CD44-201ENST00000263398 ARMC10Q8N2F6 343 aa10.36□□□□□ -0.75
CD44-201ENST00000263398 SLC37A3Q8NCC5 494 aa10.36□□□□□ -0.75
CD44-201ENST00000263398 FUBP1Q96AE4 644 aaKnown RBP10.36□□□□□ -0.75
CD44-201ENST00000263398 MGLLQ99685 303 aa10.36□□□□□ -0.75
CD44-201ENST00000263398 DHRS4Q9BTZ2 278 aa10.36□□□□□ -0.75
CD44-201ENST00000263398 HERC2P3Q9BVR0 1158 aa10.36□□□□□ -0.75
CD44-201ENST00000263398 PCTPQ9UKL6 214 aa10.36□□□□□ -0.75
CD44-201ENST00000263398 AHDC1Q5TGY3 1603 aaPredicted RBP10.35□□□□□ -0.75
CD44-201ENST00000263398 C2orf92A0A1B0GVN3 265 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 SH3PXD2BA1X283 911 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 SOCS2O14508 198 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 RPP14O95059 124 aaKnown RBP10.35□□□□□ -0.75
CD44-201ENST00000263398 OAZ2O95190 189 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 GSRP00390 522 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 STATHP02808 62 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 RLN2P04090 185 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 FGF4P08620 206 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 ARFRP1Q13795 201 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 DOC2AQ14183 400 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 PON2Q15165 354 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 TRUB1Q8WWH5 349 aaKnown RBP10.35□□□□□ -0.75
CD44-201ENST00000263398 OR51I1Q9H343 314 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 CENPMQ9NSP4 180 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 PCDHGB5Q9Y5G0 923 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 CDH10Q9Y6N8 788 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 A0A1W2PQ45 241 aaPredicted RBP10.35□□□□□ -0.75
CD44-201ENST00000263398 A0A1W2PQY0 241 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 ZNF670-ZNF695F2Z2N8 137 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 SCDO00767 359 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 MYF6P23409 242 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 ETV3P41162 512 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 GABARAPL2P60520 117 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 GRASPQ7Z6J2 395 aaPredicted RBP10.35□□□□□ -0.75
CD44-201ENST00000263398 GALNT12Q8IXK2 581 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 SCML4Q8N228 414 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 FNDC8Q8TC99 324 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 GNPDA2Q8TDQ7 276 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 TM9SF2Q99805 663 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 SERINC1Q9NRX5 453 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 HCN2Q9UL51 889 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 PCDHGA2Q9Y5H1 932 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 MYH7BA7E2Y1 1941 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 MYH3P11055 1940 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 LATS1O95835 1130 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 DCKP27707 260 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 STK19P49842 368 aaPredicted RBP10.35□□□□□ -0.75
CD44-201ENST00000263398 MS4A2Q01362 244 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 PIGFQ07326 219 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 FAM189A2Q15884 450 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 YIPF7Q8N8F6 280 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 OR2L3Q8NG85 312 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 B3GNT4Q9C0J1 378 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 ARMC1Q9NVT9 282 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 HCN3Q9P1Z3 774 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 ADAMTS5Q9UNA0 930 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 MEMO1Q9Y316 297 aa10.35□□□□□ -0.75
CD44-201ENST00000263398 EIF3FO00303 357 aaPredicted RBP10.34□□□□□ -0.75
CD44-201ENST00000263398 ZNF821O75541 412 aaPredicted RBP10.34□□□□□ -0.75
CD44-201ENST00000263398 IL3P08700 152 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 HLA-EP13747 358 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 GGT1P19440 569 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 MAP2K4P45985 399 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 GATMP50440 423 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 HNRNPA0Q13151 305 aaKnown RBP10.34□□□□□ -0.75
CD44-201ENST00000263398 DECR1Q16698 335 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 ZNF627Q7L945 461 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 GALNT7Q86SF2 657 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 TMEM17Q86X19 198 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 SNX29P2Q8IUI4 249 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 ARFGAP1Q8N6T3 406 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 ZNF548Q8NEK5 533 aaPredicted RBP10.34□□□□□ -0.75
CD44-201ENST00000263398 FBXO27Q8NI29 283 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 THRSPQ92748 146 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 CLCC1Q96S66 551 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 ENAMQ9NRM1 1142 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 UCKL1Q9NWZ5 548 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 LIPT1Q9Y234 373 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 IFT52Q9Y366 437 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 GON4LQ3T8J9 2241 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 CRYBG1Q9Y4K1 1723 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 METTL21EPA6NDL7 271 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 GLOD5A6NK44 160 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 HOXD8P13378 290 aaPredicted RBP10.34□□□□□ -0.75
CD44-201ENST00000263398 CAPN3P20807 821 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 FPGSQ05932 587 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 CTC1Q2NKJ3 1217 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 GFOD2Q3B7J2 385 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 PRAMEF17Q5VTA0 474 aa10.34□□□□□ -0.75
CD44-201ENST00000263398 TMEM236Q5W0B7 351 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms