RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 FAM74A3Q4VXF1 159 aa14.08□□□□□ -0.15
PTPRA-201ENST00000216877 NLRC3Q7RTR2 1065 aa14.08□□□□□ -0.15
PTPRA-201ENST00000216877 LAPTM4BQ86VI4 370 aa14.08□□□□□ -0.15
PTPRA-201ENST00000216877 PM20D2Q8IYS1 436 aa14.08□□□□□ -0.15
PTPRA-201ENST00000216877 OR11H7Q8NGC8 314 aa14.08□□□□□ -0.15
PTPRA-201ENST00000216877 ATOH1Q92858 354 aaPredicted RBP14.08□□□□□ -0.15
PTPRA-201ENST00000216877 PPP3R2Q96LZ3 170 aa14.08□□□□□ -0.15
PTPRA-201ENST00000216877 ZFP3Q96NJ6 502 aa14.08□□□□□ -0.15
PTPRA-201ENST00000216877 TMEM5Q9Y2B1 443 aa14.08□□□□□ -0.15
PTPRA-201ENST00000216877 GSTK1Q9Y2Q3 226 aa14.08□□□□□ -0.15
PTPRA-201ENST00000216877 TP53BP1Q12888 1972 aaPredicted RBP14.08□□□□□ -0.16
PTPRA-201ENST00000216877 ULK1O75385 1050 aa14.08□□□□□ -0.16
PTPRA-201ENST00000216877 GLUD1P00367 558 aa14.08□□□□□ -0.16
PTPRA-201ENST00000216877 DARSP14868 501 aaKnown RBP14.08□□□□□ -0.16
PTPRA-201ENST00000216877 ENGP17813 658 aa14.08□□□□□ -0.16
PTPRA-201ENST00000216877 RPS12P25398 132 aaKnown RBP14.08□□□□□ -0.16
PTPRA-201ENST00000216877 CRHR2Q13324 411 aa14.08□□□□□ -0.16
PTPRA-201ENST00000216877 PPIGQ13427 754 aaKnown RBP eCLIP14.08□□□□□ -0.161e-7■■□□□ 12.2
PTPRA-201ENST00000216877 VGLL4Q14135 290 aa14.08□□□□□ -0.16
PTPRA-201ENST00000216877 NTRK2Q16620 822 aa14.08□□□□□ -0.16
PTPRA-201ENST00000216877 GLYR1Q49A26 553 aaPredicted RBP14.08□□□□□ -0.16
PTPRA-201ENST00000216877 PLAG1Q6DJT9 500 aa14.08□□□□□ -0.16
PTPRA-201ENST00000216877 C3P1Q6ZMU1 363 aa14.08□□□□□ -0.16
PTPRA-201ENST00000216877 FBXO16Q8IX29 292 aaPredicted RBP14.08□□□□□ -0.16
PTPRA-201ENST00000216877 SECISBP2Q96T21 854 aaKnown RBP14.08□□□□□ -0.16
PTPRA-201ENST00000216877 NELL2Q99435 816 aa14.08□□□□□ -0.16
PTPRA-201ENST00000216877 TFB2MQ9H5Q4 396 aaKnown RBP14.08□□□□□ -0.16
PTPRA-201ENST00000216877 METTL17Q9H7H0 456 aaPredicted RBP14.08□□□□□ -0.16
PTPRA-201ENST00000216877 ZNF226Q9NYT6 803 aa14.08□□□□□ -0.16
PTPRA-201ENST00000216877 UXTQ9UBK9 157 aaPredicted RBP14.08□□□□□ -0.16
PTPRA-201ENST00000216877 EXTL2Q9UBQ6 330 aa14.08□□□□□ -0.16
PTPRA-201ENST00000216877 PCTPQ9UKL6 214 aa14.08□□□□□ -0.16
PTPRA-201ENST00000216877 ZNF670-ZNF695F2Z2N8 137 aa14.08□□□□□ -0.16
PTPRA-201ENST00000216877 RGS14O43566 566 aa14.08□□□□□ -0.16
PTPRA-201ENST00000216877 SRP9P49458 86 aaKnown RBP14.08□□□□□ -0.16
PTPRA-201ENST00000216877 CCL23P55773 120 aa14.08□□□□□ -0.16
PTPRA-201ENST00000216877 ATCAYQ86WG3 371 aa14.08□□□□□ -0.16
PTPRA-201ENST00000216877 GPR152Q8TDT2 470 aa14.08□□□□□ -0.16
PTPRA-201ENST00000216877 FCRL5Q96RD9 977 aa14.08□□□□□ -0.16
PTPRA-201ENST00000216877 ELAC1Q9H777 363 aaKnown RBP14.08□□□□□ -0.16
PTPRA-201ENST00000216877 B3GAT2Q9NPZ5 323 aa14.08□□□□□ -0.16
PTPRA-201ENST00000216877 SERHLQ9NQF3 203 aa14.08□□□□□ -0.16
PTPRA-201ENST00000216877 TXNL4BQ9NX01 149 aaKnown RBP14.08□□□□□ -0.16
PTPRA-201ENST00000216877 GPRC5BQ9NZH0 403 aa14.08□□□□□ -0.16
PTPRA-201ENST00000216877 PGAP2Q9UHJ9 254 aa14.08□□□□□ -0.16
PTPRA-201ENST00000216877 FKBP7Q9Y680 259 aa14.08□□□□□ -0.16
PTPRA-201ENST00000216877 CLIC1O00299 241 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 NIPSNAP2O75323 286 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 ENTPD6O75354 484 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 POU3F2P20265 443 aaPredicted RBP14.07□□□□□ -0.16
PTPRA-201ENST00000216877 ETFDHQ16134 617 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 ATAT1Q5SQI0 421 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 IDNKQ5T6J7 187 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 SKA2Q8WVK7 121 aaPredicted RBP14.07□□□□□ -0.16
PTPRA-201ENST00000216877 RNFT2Q96EX2 444 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 ZNF285Q96NJ3 590 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 SORCS2Q96PQ0 1159 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 PIP5K1AQ99755 562 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 NTMT1Q9BV86 223 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 COLEC11Q9BWP8 271 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 SLC39A8Q9C0K1 460 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 CXCL16Q9H2A7 254 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 LRTM1Q9HBL6 345 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 ENAMQ9NRM1 1142 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 CFAP20Q9Y6A4 193 aaKnown RBP14.07□□□□□ -0.16
PTPRA-201ENST00000216877 IQCF5A8MTL0 148 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 KHNYNO15037 678 aaKnown RBP14.07□□□□□ -0.16
PTPRA-201ENST00000216877 HCN1O60741 890 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 LDOC1O95751 146 aaPredicted RBP14.07□□□□□ -0.16
PTPRA-201ENST00000216877 SLC14A1Q13336 389 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 DDX39BQ13838 428 aaKnown RBP14.07□□□□□ -0.16
PTPRA-201ENST00000216877 OPCMLQ14982 345 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 LY6KQ17RY6 165 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 CCNJQ5T5M9 372 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 KIAA1191Q96A73 305 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 TMED9Q9BVK6 235 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 NIT2Q9NQR4 276 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 I6L893 689 aaPredicted RBP14.07□□□□□ -0.16
PTPRA-201ENST00000216877 PRRG1O14668 218 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 MAFO75444 373 aaPredicted RBP14.07□□□□□ -0.16
PTPRA-201ENST00000216877 CELF2O95319 508 aaKnown RBP14.07□□□□□ -0.16
PTPRA-201ENST00000216877 GPR176Q14439 515 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 PAN3Q58A45 887 aaKnown RBP14.07□□□□□ -0.16
PTPRA-201ENST00000216877 IL20RBQ6UXL0 311 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 RRM2BQ7LG56 351 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 EEF1AKMT1Q8WVE0 214 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 CYP2S1Q96SQ9 504 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 NPY6RQ99463 290 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 COPS8Q99627 209 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 RC3H2Q9HBD1 1191 aaKnown RBP14.07□□□□□ -0.16
PTPRA-201ENST00000216877 TMEM184CQ9NVA4 438 aa14.07□□□□□ -0.16
PTPRA-201ENST00000216877 LCTP09848 1927 aa14.06□□□□□ -0.16
PTPRA-201ENST00000216877 MID1O15344 667 aa14.06□□□□□ -0.16
PTPRA-201ENST00000216877 ECDO95905 644 aaPredicted RBP14.06□□□□□ -0.16
PTPRA-201ENST00000216877 MEOX2P50222 304 aa14.06□□□□□ -0.16
PTPRA-201ENST00000216877 ABHD18Q0P651 414 aa14.06□□□□□ -0.16
PTPRA-201ENST00000216877 SF3A2Q15428 464 aaKnown RBP14.06□□□□□ -0.16
PTPRA-201ENST00000216877 EXOC3L2Q2M3D2 409 aa14.06□□□□□ -0.16
PTPRA-201ENST00000216877 USP45Q70EL2 814 aa14.06□□□□□ -0.16
PTPRA-201ENST00000216877 FUBP1Q96AE4 644 aaKnown RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms