RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 ELK4P28324 431 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 GZMKP49863 264 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 VAMP2P63027 116 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 RASGEF1BQ0VAM2 473 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 GNMTQ14749 295 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 EFCAB12Q6NXP0 572 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 AGMOQ6ZNB7 445 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ADGRG3Q86Y34 549 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ADGRG5Q8IZF4 528 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 CCDC120Q96HB5 630 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 NEURL2Q9BR09 285 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 SLC28A3Q9HAS3 691 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 MRPS33Q9Y291 106 aaKnown RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 SLC35F4A4IF30 521 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 INHAP05111 366 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 OR3A2P47893 321 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 VSX2P58304 361 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ADARB1P78563 741 aaKnown RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 SLC10A7Q0GE19 358 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 SMAD1Q15797 465 aaKnown RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 GLT8D1Q68CQ7 371 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 C2CD4AQ8NCU7 369 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF248Q8NDW4 579 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 TSEN15Q8WW01 171 aaKnown RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 PIWIL1Q96J94 861 aaKnown RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 OR14A2Q96R54 314 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 NOX1Q9Y5S8 564 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 FAM208AQ9UK61 1670 aaKnown RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF705EA8MWA4 302 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF670-ZNF695F2Z2N8 137 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 CSF2P04141 144 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ARSBP15848 533 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ABCA11PQ4W5N1 156 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ACTBL2Q562R1 376 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 NRROSQ86YC3 692 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 LIX1Q8N485 282 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF433Q8N7K0 673 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 HJURPQ8NCD3 748 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ATP6V1C2Q8NEY4 427 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 SPHK1Q9NYA1 384 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 GMPR2Q9P2T1 348 aaKnown RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 P2RX2Q9UBL9 471 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 CLIC1O00299 241 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 SCO2O43819 266 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ALPLP05186 524 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 S100A11P31949 105 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 TAGLN2P37802 199 aaKnown RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 FNTBP49356 437 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 CACNB2Q08289 660 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 PPP1R3AQ16821 1122 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 OR56A1Q8NGH5 318 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 HS6ST2Q96MM7 605 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 PRRT1Q99946 306 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 SULT4A1Q9BR01 284 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ITM2CQ9NQX7 267 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ATG4BQ9Y4P1 393 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 hCG_2039718K7EN88 272 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 GPR25O00155 361 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 THEGLP0DJG4 465 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 UBL4AP11441 157 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 CKBP12277 381 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 GOT1P17174 413 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ITGA3P26006 1051 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ADORA2AP29274 412 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 SSTR3P32745 418 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 BUD31P41223 144 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 HOXA1P49639 335 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 MANFP55145 182 aaKnown RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 GPR85P60893 370 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 CTBP1Q13363 440 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 PPM1JQ5JR12 505 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 NPNTQ6UXI9 565 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 NAXDQ8IW45 347 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 TMEM185AQ8NFB2 350 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 CXorf40AQ8TE69 158 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 RNF31Q96EP0 1072 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 MRPL45Q9BRJ2 306 aaKnown RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 TSSK6Q9BXA6 273 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ZDHHC2Q9UIJ5 367 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 DLGAP4Q9Y2H0 992 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 J3KR12 359 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 XKRYO14609 159 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 TP53P04637 393 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 SLC14A2Q15849 920 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 CYBRD1Q53TN4 286 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 REEP3Q6NUK4 255 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 DNM1P34Q6PK57 102 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 BRINP3Q76B58 766 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 SLC46A3Q7Z3Q1 461 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 PXKQ7Z7A4 578 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 RAVER1Q8IY67 606 aaKnown RBP4.51□□□□□ -1.69
SCN1A-220ENST00000641603 SHKBP1Q8TBC3 707 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 ISL2Q96A47 359 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 SLC25A36Q96CQ1 311 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 TSGA13Q96PP4 275 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 COPS8Q99627 209 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 SLC19A3Q9BZV2 496 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 KCNJ16Q9NPI9 418 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 NPFFR2Q9Y5X5 522 aa4.51□□□□□ -1.69
SCN1A-220ENST00000641603 PREX1Q8TCU6 1659 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms