RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 RUNDC3BQ96NL0 473 aa2.89□□□□□ -1.95
CD44-239ENST00000639002 TNFRSF13CQ96RJ3 184 aa2.89□□□□□ -1.95
CD44-239ENST00000639002 PCDHB18PQ96TA0 734 aa2.89□□□□□ -1.95
CD44-239ENST00000639002 KATNB1Q9BVA0 655 aa2.89□□□□□ -1.95
CD44-239ENST00000639002 KLK4Q9Y5K2 254 aa2.89□□□□□ -1.95
CD44-239ENST00000639002 A0A1W2PPW3 197 aa2.88□□□□□ -1.95
CD44-239ENST00000639002 IGLON5A6NGN9 336 aa2.88□□□□□ -1.95
CD44-239ENST00000639002 E5RGE8 158 aa2.88□□□□□ -1.95
CD44-239ENST00000639002 ANHXE9PGG2 379 aa2.88□□□□□ -1.95
CD44-239ENST00000639002 KBTBD11O94819 623 aa2.88□□□□□ -1.95
CD44-239ENST00000639002 C9P02748 559 aa2.88□□□□□ -1.95
CD44-239ENST00000639002 UMPSP11172 480 aa2.88□□□□□ -1.95
CD44-239ENST00000639002 GOT1P17174 413 aa2.88□□□□□ -1.95
CD44-239ENST00000639002 CDX1P47902 265 aaPredicted RBP2.88□□□□□ -1.95
CD44-239ENST00000639002 HLCSP50747 726 aa2.88□□□□□ -1.95
CD44-239ENST00000639002 IL10RBQ08334 325 aa2.88□□□□□ -1.95
CD44-239ENST00000639002 EIF4EBP2Q13542 120 aaPredicted RBP2.88□□□□□ -1.95
CD44-239ENST00000639002 MAPRE1Q15691 268 aaKnown RBP2.88□□□□□ -1.95
CD44-239ENST00000639002 MUC21Q5SSG8 566 aa2.88□□□□□ -1.95
CD44-239ENST00000639002 GPR141Q7Z602 305 aa2.88□□□□□ -1.95
CD44-239ENST00000639002 BANPQ8N9N5 519 aa2.88□□□□□ -1.95
CD44-239ENST00000639002 GTPBP2Q9BX10 602 aaKnown RBP2.88□□□□□ -1.95
CD44-239ENST00000639002 LCE3DQ9BYE3 92 aa2.88□□□□□ -1.95
CD44-239ENST00000639002 ST6GALNAC4Q9H4F1 302 aa2.88□□□□□ -1.95
CD44-239ENST00000639002 C10orf88Q9H8K7 445 aa2.88□□□□□ -1.95
CD44-239ENST00000639002 KCNK13Q9HB14 408 aa2.88□□□□□ -1.95
CD44-239ENST00000639002 PDFQ9HBH1 243 aa2.88□□□□□ -1.95
CD44-239ENST00000639002 IL17CQ9P0M4 197 aa2.88□□□□□ -1.95
CD44-239ENST00000639002 UBQLN2Q9UHD9 624 aa2.88□□□□□ -1.95
CD44-239ENST00000639002 NIP7Q9Y221 180 aaKnown RBP eCLIP2.88□□□□□ -1.95
CD44-239ENST00000639002 NSG2Q9Y328 171 aa2.88□□□□□ -1.95
CD44-239ENST00000639002 SLC6A5Q9Y345 797 aa2.88□□□□□ -1.95
CD44-239ENST00000639002 LOC390937A0A1W2PQ73 354 aa2.87□□□□□ -1.95
CD44-239ENST00000639002 TMEM150CB9EJG8 249 aa2.87□□□□□ -1.95
CD44-239ENST00000639002 FASP25445 335 aa2.87□□□□□ -1.95
CD44-239ENST00000639002 SSTR1P30872 391 aa2.87□□□□□ -1.95
CD44-239ENST00000639002 PPP5CP53041 499 aa2.87□□□□□ -1.95
CD44-239ENST00000639002 MZT1Q08AG7 82 aa2.87□□□□□ -1.95
CD44-239ENST00000639002 PCK2Q16822 640 aa2.87□□□□□ -1.95
CD44-239ENST00000639002 FAM174BQ3ZCQ3 159 aa2.87□□□□□ -1.95
CD44-239ENST00000639002 KHDRBS2Q5VWX1 349 aaKnown RBP2.87□□□□□ -1.95
CD44-239ENST00000639002 CST9LP1Q5W188 147 aa2.87□□□□□ -1.95
CD44-239ENST00000639002 RFWD3Q6PCD5 774 aa2.87□□□□□ -1.95
CD44-239ENST00000639002 MACC1Q6ZN28 852 aa2.87□□□□□ -1.95
CD44-239ENST00000639002 Q71RC1 249 aaPredicted RBP2.87□□□□□ -1.95
CD44-239ENST00000639002 NAXDQ8IW45 347 aa2.87□□□□□ -1.95
CD44-239ENST00000639002 RCHY1Q96PM5 261 aa2.87□□□□□ -1.95
CD44-239ENST00000639002 PINK1Q9BXM7 581 aa2.87□□□□□ -1.95
CD44-239ENST00000639002 ANKRD2Q9GZV1 360 aa2.87□□□□□ -1.95
CD44-239ENST00000639002 PLEKHA3Q9HB20 300 aa2.87□□□□□ -1.95
CD44-239ENST00000639002 ARMCX1Q9P291 453 aa2.87□□□□□ -1.95
CD44-239ENST00000639002 GTF3C4Q9UKN8 822 aa2.87□□□□□ -1.95
CD44-239ENST00000639002 MRPL11Q9Y3B7 192 aaKnown RBP2.87□□□□□ -1.95
CD44-239ENST00000639002 TEX48A0A1B0GUV7 120 aa2.86□□□□□ -1.95
CD44-239ENST00000639002 H0Y9J4 135 aa2.86□□□□□ -1.95
CD44-239ENST00000639002 E2F3O00716 465 aa2.86□□□□□ -1.95
CD44-239ENST00000639002 FBP2O00757 339 aa2.86□□□□□ -1.95
CD44-239ENST00000639002 SUPT20HL2P0C7V6 817 aa2.86□□□□□ -1.95
CD44-239ENST00000639002 MYBL1P10243 752 aa2.86□□□□□ -1.95
CD44-239ENST00000639002 CTNNA2P26232 953 aa2.86□□□□□ -1.95
CD44-239ENST00000639002 AIMP1Q12904 312 aaKnown RBP2.86□□□□□ -1.95
CD44-239ENST00000639002 SLC22A6Q4U2R8 563 aa2.86□□□□□ -1.95
CD44-239ENST00000639002 MARC1Q5VT66 337 aa2.86□□□□□ -1.95
CD44-239ENST00000639002 TCEAL6Q6IPX3 200 aa2.86□□□□□ -1.95
CD44-239ENST00000639002 CGB2Q6NT52 195 aa2.86□□□□□ -1.95
CD44-239ENST00000639002 CFAP161Q6P656 301 aa2.86□□□□□ -1.95
CD44-239ENST00000639002 C15orf52Q6ZUT6 534 aaKnown RBP2.86□□□□□ -1.95
CD44-239ENST00000639002 KCTD6Q8NC69 237 aa2.86□□□□□ -1.95
CD44-239ENST00000639002 GTSF1Q8WW33 167 aa2.86□□□□□ -1.95
CD44-239ENST00000639002 PHYHIPLQ96FC7 376 aa2.86□□□□□ -1.95
CD44-239ENST00000639002 CUTCQ9NTM9 273 aa2.86□□□□□ -1.95
CD44-239ENST00000639002 MRGBPQ9NV56 204 aa2.86□□□□□ -1.95
CD44-239ENST00000639002 C5AR2Q9P296 337 aa2.86□□□□□ -1.95
CD44-239ENST00000639002 LIPGQ9Y5X9 500 aa2.86□□□□□ -1.95
CD44-239ENST00000639002 TCP10L2B9ZVM9 353 aa2.85□□□□□ -1.95
CD44-239ENST00000639002 NPIPA3F8WFD2 350 aa2.85□□□□□ -1.95
CD44-239ENST00000639002 FRAT2O75474 233 aaPredicted RBP2.85□□□□□ -1.95
CD44-239ENST00000639002 LUC7L3O95232 432 aaKnown RBP2.85□□□□□ -1.95
CD44-239ENST00000639002 EEF2P13639 858 aaKnown RBP2.85□□□□□ -1.95
CD44-239ENST00000639002 AKR1B1P15121 316 aa2.85□□□□□ -1.95
CD44-239ENST00000639002 ATP6V1B1P15313 513 aa2.85□□□□□ -1.95
CD44-239ENST00000639002 BACE1P56817 501 aa2.85□□□□□ -1.95
CD44-239ENST00000639002 RPS27AP62979 156 aaKnown RBP2.85□□□□□ -1.95
CD44-239ENST00000639002 NAAAQ02083 359 aa2.85□□□□□ -1.95
CD44-239ENST00000639002 C2orf83Q53S99 150 aa2.85□□□□□ -1.95
CD44-239ENST00000639002 CAMKVQ8NCB2 501 aa2.85□□□□□ -1.95
CD44-239ENST00000639002 SLC26A7Q8TE54 656 aa2.85□□□□□ -1.95
CD44-239ENST00000639002 ESAMQ96AP7 390 aa2.85□□□□□ -1.95
CD44-239ENST00000639002 HSD17B14Q9BPX1 270 aa2.85□□□□□ -1.95
CD44-239ENST00000639002 TMX4Q9H1E5 349 aaPredicted RBP2.85□□□□□ -1.95
CD44-239ENST00000639002 DBF4Q9UBU7 674 aaPredicted RBP2.85□□□□□ -1.95
CD44-239ENST00000639002 TRAV9-2A0A087WT02 112 aa2.84□□□□□ -1.95
CD44-239ENST00000639002 ZNF732B4DXR9 585 aa2.84□□□□□ -1.95
CD44-239ENST00000639002 PGRMC2O15173 223 aa2.84□□□□□ -1.95
CD44-239ENST00000639002 TSC22D2O75157 780 aa2.84□□□□□ -1.95
CD44-239ENST00000639002 PENKP01210 267 aaPredicted RBP2.84□□□□□ -1.95
CD44-239ENST00000639002 PIGRP01833 764 aa2.84□□□□□ -1.95
CD44-239ENST00000639002 DLATP10515 647 aaKnown RBP2.84□□□□□ -1.95
CD44-239ENST00000639002 MGMTP16455 207 aa2.84□□□□□ -1.95
CD44-239ENST00000639002 RPL9P32969 192 aaKnown RBP2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms