RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 MYNNQ9NPC7 610 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 VAPAQ9P0L0 249 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 ANKMY1Q9P2S6 941 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 DFNA5O60443 496 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 RASSF9O75901 435 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 ATP5A1P25705 553 aaKnown RBP19.12■□□□□ 0.65
CLN3-250ENST00000636839 CCT8P50990 548 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 EPHA4P54764 986 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 BTN3A2P78410 334 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 SELPLGQ14242 412 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 KCNAB1Q14722 419 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 MPEG1Q2M385 716 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 TRMT5Q32P41 509 aaKnown RBP19.12■□□□□ 0.65
CLN3-250ENST00000636839 PIGGQ5H8A4 983 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 SNAP47Q5SQN1 464 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 CPTPQ5TA50 214 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 PRR23CQ6ZRP0 262 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 PRSS41Q7RTY9 318 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 DHDDSQ86SQ9 333 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 MSRB3Q8IXL7 192 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 FAM9CQ8IZT9 166 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 DTWD1Q8N5C7 304 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 ACOT4Q8N9L9 421 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 NT5CQ8TCD5 201 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 UTP15Q8TED0 518 aaKnown RBP19.12■□□□□ 0.65
CLN3-250ENST00000636839 CIDECQ96AQ7 238 aaPredicted RBP19.12■□□□□ 0.65
CLN3-250ENST00000636839 REEP4Q9H6H4 257 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 C1GALT1Q9NS00 363 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 CMTM6Q9NX76 183 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 UNC13CQ8NB66 2214 aa19.12■□□□□ 0.65
CLN3-250ENST00000636839 PRORSD1PA6NEY8 169 aa19.11■□□□□ 0.65
CLN3-250ENST00000636839 ENTPD5O75356 428 aa19.11■□□□□ 0.65
CLN3-250ENST00000636839 FURINP09958 794 aa19.11■□□□□ 0.65
CLN3-250ENST00000636839 HIST1H1TP22492 207 aaPredicted RBP19.11■□□□□ 0.65
CLN3-250ENST00000636839 GSTM2P28161 218 aa19.11■□□□□ 0.65
CLN3-250ENST00000636839 ATXN3P54252 364 aaPredicted RBP19.11■□□□□ 0.65
CLN3-250ENST00000636839 MTTPP55157 894 aa19.11■□□□□ 0.65
CLN3-250ENST00000636839 C21orf58P58505 322 aa19.11■□□□□ 0.65
CLN3-250ENST00000636839 SLAMF1Q13291 335 aa19.11■□□□□ 0.65
CLN3-250ENST00000636839 PWP1Q13610 501 aa19.11■□□□□ 0.65
CLN3-250ENST00000636839 KPNB1Q14974 876 aaKnown RBP19.11■□□□□ 0.65
CLN3-250ENST00000636839 PAGE2Q7Z2X7 111 aa19.11■□□□□ 0.65
CLN3-250ENST00000636839 TMPRSS9Q7Z410 1059 aa19.11■□□□□ 0.65
CLN3-250ENST00000636839 GPR180Q86V85 440 aa19.11■□□□□ 0.65
CLN3-250ENST00000636839 SLC15A3Q8IY34 581 aa19.11■□□□□ 0.65
CLN3-250ENST00000636839 NUDT22Q9BRQ3 303 aa19.11■□□□□ 0.65
CLN3-250ENST00000636839 DUSP23Q9BVJ7 150 aa19.11■□□□□ 0.65
CLN3-250ENST00000636839 MMADHCQ9H3L0 296 aaPredicted RBP19.11■□□□□ 0.65
CLN3-250ENST00000636839 SLC25A37Q9NYZ2 338 aa19.11■□□□□ 0.65
CLN3-250ENST00000636839 CROCCQ5TZA2 2017 aa19.11■□□□□ 0.65
CLN3-250ENST00000636839 DYTNA2CJ06 578 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 NME4O00746 187 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 PRMT3O60678 531 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 FKBP9O95302 570 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 SLC35G6P0C7Q6 338 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 SEPHS1P49903 392 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 DEFB134Q4QY38 66 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 NANOGP8Q6NSW7 305 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 TRIM40Q6P9F5 258 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 SPRED1Q7Z699 444 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 MCATQ8IVS2 390 aaKnown RBP19.1■□□□□ 0.65
CLN3-250ENST00000636839 C10orf67Q8IYJ2 551 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 MINDY1Q8N5J2 469 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 RERGQ96A58 199 aaPredicted RBP19.1■□□□□ 0.65
CLN3-250ENST00000636839 KCNC2Q96PR1 638 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 DUSP26Q9BV47 211 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 NANOGQ9H9S0 305 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 GID8Q9NWU2 228 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 TMEM181Q9P2C4 612 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 ATXN7L1Q9ULK2 861 aaPredicted RBP19.1■□□□□ 0.65
CLN3-250ENST00000636839 SPTBP11277 2137 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 NUP214P35658 2090 aaPredicted RBP19.1■□□□□ 0.65
CLN3-250ENST00000636839 GLOD5A6NK44 160 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 A8MU76 341 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 AGRPO00253 132 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 MAP3K7O43318 606 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 EPN2O95208 641 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 SOX11P35716 441 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 HPCAL1P37235 193 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 ALDH9A1P49189 494 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 STXBP1P61764 594 aaKnown RBP19.1■□□□□ 0.65
CLN3-250ENST00000636839 RELAQ04206 551 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 RGS1Q08116 209 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 CYB5D1Q6P9G0 228 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 RABEPKQ7Z6M1 372 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 TICAM1Q8IUC6 712 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 DNAJC22Q8N4W6 341 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 CSNK1A1LQ8N752 337 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 OR8J2Q8NGG1 315 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 COQ8BQ96D53 544 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 AURKBQ96GD4 344 aaPredicted RBP19.1■□□□□ 0.65
CLN3-250ENST00000636839 PAIP1Q9H074 479 aaKnown RBP19.1■□□□□ 0.65
CLN3-250ENST00000636839 IKZF5Q9H5V7 419 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 SPAG4Q9NPE6 437 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 NDE1Q9NXR1 346 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 PRPF19Q9UMS4 504 aaKnown RBP19.1■□□□□ 0.65
CLN3-250ENST00000636839 USP22Q9UPT9 525 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 ATG4BQ9Y4P1 393 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 PCDHA9Q9Y5H5 950 aa19.1■□□□□ 0.65
CLN3-250ENST00000636839 TNFRSF10AO00220 468 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms