RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 FCHO1O14526 889 aa15.08■□□□□ 0
CLN3-246ENST00000636228 PRRG2O14669 202 aa15.08■□□□□ 0
CLN3-246ENST00000636228 PEX1O43933 1283 aa15.08■□□□□ 0
CLN3-246ENST00000636228 HS6ST1O60243 411 aa15.08■□□□□ 0
CLN3-246ENST00000636228 CDC40O60508 579 aaKnown RBP eCLIP15.08■□□□□ 0
CLN3-246ENST00000636228 PDE9AO76083 593 aa15.08■□□□□ 0
CLN3-246ENST00000636228 HNRNPFP52597 415 aaKnown RBP15.08■□□□□ 0
CLN3-246ENST00000636228 GPR85P60893 370 aa15.08■□□□□ 0
CLN3-246ENST00000636228 NIPAL1Q6NVV3 410 aa15.08■□□□□ 0
CLN3-246ENST00000636228 PDIK1LQ8N165 341 aa15.08■□□□□ 0
CLN3-246ENST00000636228 APCDD1LQ8NCL9 501 aa15.08■□□□□ 0
CLN3-246ENST00000636228 TMEM52Q8NDY8 209 aa15.08■□□□□ 0
CLN3-246ENST00000636228 ANKRD49Q8WVL7 239 aa15.08■□□□□ 0
CLN3-246ENST00000636228 SDCCAG3Q96C92 435 aa15.08■□□□□ 0
CLN3-246ENST00000636228 PDLIM5Q96HC4 596 aaKnown RBP15.08■□□□□ 0
CLN3-246ENST00000636228 PDLIM2Q96JY6 352 aa15.08■□□□□ 0
CLN3-246ENST00000636228 DMRTA2Q96SC8 542 aa15.08■□□□□ 0
CLN3-246ENST00000636228 ZNF223Q9UK11 482 aaPredicted RBP15.08■□□□□ 0
CLN3-246ENST00000636228 CORO1CQ9ULV4 474 aaPredicted RBP15.08■□□□□ 0
CLN3-246ENST00000636228 PPT2Q9UMR5 302 aa15.08■□□□□ 0
CLN3-246ENST00000636228 KCNE2Q9Y6J6 123 aa15.08■□□□□ 0
CLN3-246ENST00000636228 SCN2AQ99250 2005 aa15.08■□□□□ 0
CLN3-246ENST00000636228 URADA6NGE7 173 aa15.07■□□□□ 0
CLN3-246ENST00000636228 NCF1BA6NI72 391 aaPredicted RBP15.07■□□□□ 0
CLN3-246ENST00000636228 NCF1CA8MVU1 366 aaPredicted RBP15.07■□□□□ 0
CLN3-246ENST00000636228 E9PLN8 166 aa15.07■□□□□ 0
CLN3-246ENST00000636228 TFECO14948 347 aaPredicted RBP15.07■□□□□ 0
CLN3-246ENST00000636228 PRKNO60260 465 aaPredicted RBP15.07■□□□□ 0
CLN3-246ENST00000636228 PIAS1O75925 651 aa15.07■□□□□ 0
CLN3-246ENST00000636228 SERPINA6P08185 405 aa15.07■□□□□ 0
CLN3-246ENST00000636228 NCF1P14598 390 aaPredicted RBP15.07■□□□□ 0
CLN3-246ENST00000636228 ZNF37AP17032 561 aaPredicted RBP15.07■□□□□ 0
CLN3-246ENST00000636228 HNRNPH1P31943 449 aaKnown RBP15.07■□□□□ 0
CLN3-246ENST00000636228 CLCN2P51788 898 aa15.07■□□□□ 0
CLN3-246ENST00000636228 TAS2R39P59534 338 aa15.07■□□□□ 0
CLN3-246ENST00000636228 TSNQ15631 228 aaKnown RBP15.07■□□□□ 0
CLN3-246ENST00000636228 FBXO48Q5FWF7 155 aa15.07■□□□□ 0
CLN3-246ENST00000636228 CEP128Q6ZU80 1094 aa15.07■□□□□ 0
CLN3-246ENST00000636228 CEP97Q8IW35 865 aa15.07■□□□□ 0
CLN3-246ENST00000636228 KLHL7Q8IXQ5 586 aa15.07■□□□□ 0
CLN3-246ENST00000636228 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.07■□□□□ 0
CLN3-246ENST00000636228 SPATA6LQ8N4H0 392 aa15.07■□□□□ 0
CLN3-246ENST00000636228 ARMC2Q8NEN0 867 aa15.07■□□□□ 0
CLN3-246ENST00000636228 CCT6BQ92526 530 aa15.07■□□□□ 0
CLN3-246ENST00000636228 VKORC1Q9BQB6 163 aa15.07■□□□□ 0
CLN3-246ENST00000636228 TRMT1Q9NXH9 659 aaKnown RBP15.07■□□□□ 0
CLN3-246ENST00000636228 TEX264Q9Y6I9 313 aa15.07■□□□□ 0
CLN3-246ENST00000636228 FAM95CA0A1B0GW59 222 aa15.06■□□□□ 0
CLN3-246ENST00000636228 ITGA10O75578 1167 aa15.06■□□□□ 0
CLN3-246ENST00000636228 WDR47O94967 919 aa15.06■□□□□ 0
CLN3-246ENST00000636228 TPOP07202 933 aa15.06■□□□□ 0
CLN3-246ENST00000636228 C1GALT1C1LP0DN25 315 aa15.06■□□□□ 0
CLN3-246ENST00000636228 PTGS2P35354 604 aa15.06■□□□□ 0
CLN3-246ENST00000636228 SLBPQ14493 270 aaKnown RBP eCLIP15.06■□□□□ 0
CLN3-246ENST00000636228 CMPK2Q5EBM0 449 aa15.06■□□□□ 0
CLN3-246ENST00000636228 STEAP4Q687X5 459 aa15.06■□□□□ 0
CLN3-246ENST00000636228 CLNKQ7Z7G1 428 aa15.06■□□□□ 0
CLN3-246ENST00000636228 CD163Q86VB7 1156 aa15.06■□□□□ 0
CLN3-246ENST00000636228 ZC3HC1Q86WB0 502 aaKnown RBP15.06■□□□□ 0
CLN3-246ENST00000636228 CYP4Z2PQ8N1L4 340 aa15.06■□□□□ 0
CLN3-246ENST00000636228 NKAPQ8N5F7 415 aaKnown RBP15.06■□□□□ 0
CLN3-246ENST00000636228 TMEM156Q8N614 296 aa15.06■□□□□ 0
CLN3-246ENST00000636228 FAM47BQ8NA70 645 aa15.06■□□□□ 0
CLN3-246ENST00000636228 B3GNT7Q8NFL0 401 aa15.06■□□□□ 0
CLN3-246ENST00000636228 OR52N2Q8NGI0 321 aa15.06■□□□□ 0
CLN3-246ENST00000636228 CA5BP1Q8WTZ4 195 aa15.06■□□□□ 0
CLN3-246ENST00000636228 NCLNQ969V3 563 aa15.06■□□□□ 0
CLN3-246ENST00000636228 FAR2Q96K12 515 aa15.06■□□□□ 0
CLN3-246ENST00000636228 CAPZA3Q96KX2 299 aa15.06■□□□□ 0
CLN3-246ENST00000636228 CLK4Q9HAZ1 481 aaKnown RBP15.06■□□□□ 0
CLN3-246ENST00000636228 PRTFDC1Q9NRG1 225 aa15.06■□□□□ 0
CLN3-246ENST00000636228 KLF13Q9Y2Y9 288 aaPredicted RBP15.06■□□□□ 0
CLN3-246ENST00000636228 CLDN16Q9Y5I7 305 aa15.06■□□□□ 0
CLN3-246ENST00000636228 TEP1Q99973 2627 aaKnown RBP15.06■□□□□ 0
CLN3-246ENST00000636228 AKAP9Q99996 3911 aa15.06■□□□□ 0
CLN3-246ENST00000636228 KLRC4-KLRK1H3BQV0 150 aa15.05■□□□□ -0
CLN3-246ENST00000636228 ERI3O43414 337 aaKnown RBP15.05■□□□□ -0
CLN3-246ENST00000636228 H2AFYO75367 372 aaKnown RBP15.05■□□□□ -0
CLN3-246ENST00000636228 TFEBP19484 476 aa15.05■□□□□ -0
CLN3-246ENST00000636228 PLA2G16P53816 162 aa15.05■□□□□ -0
CLN3-246ENST00000636228 MGAT5Q09328 741 aa15.05■□□□□ -0
CLN3-246ENST00000636228 FASTKD3Q14CZ7 662 aaKnown RBP15.05■□□□□ -0
CLN3-246ENST00000636228 MORF4L2Q15014 288 aa15.05■□□□□ -0
CLN3-246ENST00000636228 XKR6Q5GH73 641 aa15.05■□□□□ -0
CLN3-246ENST00000636228 ADNP2Q6IQ32 1131 aa15.05■□□□□ -0
CLN3-246ENST00000636228 SLCO4C1Q6ZQN7 724 aa15.05■□□□□ -0
CLN3-246ENST00000636228 SCUBE1Q8IWY4 988 aa15.05■□□□□ -0
CLN3-246ENST00000636228 KLHDC8AQ8IYD2 350 aa15.05■□□□□ -0
CLN3-246ENST00000636228 ARMC10Q8N2F6 343 aa15.05■□□□□ -0
CLN3-246ENST00000636228 RPRMLQ8N4K4 120 aa15.05■□□□□ -0
CLN3-246ENST00000636228 MARVELD2Q8N4S9 558 aa15.05■□□□□ -0
CLN3-246ENST00000636228 FAM57AQ8TBR7 257 aa15.05■□□□□ -0
CLN3-246ENST00000636228 PHF10Q8WUB8 498 aaKnown RBP15.05■□□□□ -0
CLN3-246ENST00000636228 SLCO2A1Q92959 643 aa15.05■□□□□ -0
CLN3-246ENST00000636228 RHBDF1Q96CC6 855 aa15.05■□□□□ -0
CLN3-246ENST00000636228 MS4A6EQ96DS6 147 aa15.05■□□□□ -0
CLN3-246ENST00000636228 TRIM31Q9BZY9 425 aa15.05■□□□□ -0
CLN3-246ENST00000636228 DEFB127Q9H1M4 99 aa15.05■□□□□ -0
CLN3-246ENST00000636228 KCMF1Q9P0J7 381 aa15.05■□□□□ -0
CLN3-246ENST00000636228 CTNNAL1Q9UBT7 734 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms