RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 EHD3Q9NZN3 535 aa8.89□□□□□ -0.99
GGA3-223ENST00000621870 CLEC4AQ9UMR7 237 aa8.89□□□□□ -0.99
GGA3-223ENST00000621870 PSMD11O00231 422 aa8.89□□□□□ -0.99
GGA3-223ENST00000621870 FAM189A1O60320 539 aa8.89□□□□□ -0.99
GGA3-223ENST00000621870 UGT2B11O75310 529 aa8.89□□□□□ -0.99
GGA3-223ENST00000621870 AHSA1O95433 338 aa8.89□□□□□ -0.99
GGA3-223ENST00000621870 C9P02748 559 aa8.89□□□□□ -0.99
GGA3-223ENST00000621870 GABRA3P34903 492 aa8.89□□□□□ -0.99
GGA3-223ENST00000621870 TMED10P49755 219 aaKnown RBP8.89□□□□□ -0.99
GGA3-223ENST00000621870 GDI2P50395 445 aaKnown RBP8.89□□□□□ -0.99
GGA3-223ENST00000621870 HTR6P50406 440 aa8.89□□□□□ -0.99
GGA3-223ENST00000621870 SHC2P98077 582 aa8.89□□□□□ -0.99
GGA3-223ENST00000621870 IRF4Q15306 451 aa8.89□□□□□ -0.99
GGA3-223ENST00000621870 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.89□□□□□ -0.99
GGA3-223ENST00000621870 THAP5Q7Z6K1 395 aa8.89□□□□□ -0.99
GGA3-223ENST00000621870 GALNT12Q8IXK2 581 aa8.89□□□□□ -0.99
GGA3-223ENST00000621870 ZZZ3Q8IYH5 903 aa8.89□□□□□ -0.99
GGA3-223ENST00000621870 LGI4Q8N135 537 aa8.89□□□□□ -0.99
GGA3-223ENST00000621870 KRTCAP2Q8N6L1 136 aa8.89□□□□□ -0.99
GGA3-223ENST00000621870 OR6N1Q8NGY5 312 aa8.89□□□□□ -0.99
GGA3-223ENST00000621870 ZNF483Q8TF39 744 aaPredicted RBP8.89□□□□□ -0.99
GGA3-223ENST00000621870 FUBP1Q96AE4 644 aaKnown RBP8.89□□□□□ -0.99
GGA3-223ENST00000621870 PRR11Q96HE9 360 aaPredicted RBP8.89□□□□□ -0.99
GGA3-223ENST00000621870 PHF7Q9BWX1 381 aaPredicted RBP8.89□□□□□ -0.99
GGA3-223ENST00000621870 CLK4Q9HAZ1 481 aaKnown RBP8.89□□□□□ -0.99
GGA3-223ENST00000621870 STOX2Q9P2F5 926 aaPredicted RBP8.89□□□□□ -0.99
GGA3-223ENST00000621870 NUP205Q92621 2012 aa8.89□□□□□ -0.99
GGA3-223ENST00000621870 BCAT2O15382 392 aaPredicted RBP8.88□□□□□ -0.99
GGA3-223ENST00000621870 TPD52L2O43399 206 aaKnown RBP8.88□□□□□ -0.99
GGA3-223ENST00000621870 CH25HO95992 272 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 PVRP15151 417 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 CBLP22681 906 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 RIPK1Q13546 671 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 CCNIQ14094 377 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 ABRAXAS2Q15018 415 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 ZSWIM7Q19AV6 140 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 PNCKQ6P2M8 343 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 EPGNQ6UW88 154 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 SHISA6Q6ZSJ9 500 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 RFLNAQ6ZTI6 216 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 UBE2J2Q8N2K1 259 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 OR10G2Q8NGC3 310 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 NXPE3Q969Y0 559 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 GAL3ST1Q99999 423 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 SLC6A17Q9H1V8 727 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 RMI1Q9H9A7 625 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 KCNK12Q9HB15 430 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 LYARQ9NX58 379 aaKnown RBP8.88□□□□□ -0.99
GGA3-223ENST00000621870 STMN3Q9NZ72 180 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 C5AR2Q9P296 337 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 BDP1A6H8Y1 2624 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 BLOC1S5-TXNDC5H3BN57 136 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 EI24O14681 340 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 CASKO14936 926 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 ARPC2O15144 300 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 H1F0P07305 194 aaKnown RBP8.88□□□□□ -0.99
GGA3-223ENST00000621870 HOXA9P31269 272 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 DNAJB13P59910 316 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 RPS15AP62244 130 aaKnown RBP8.88□□□□□ -0.99
GGA3-223ENST00000621870 MADCAM1Q13477 382 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 FLYWCH1Q4VC44 716 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 C10orf62Q5T681 223 aaPredicted RBP8.88□□□□□ -0.99
GGA3-223ENST00000621870 CXorf57Q6NSI4 855 aaKnown RBP8.88□□□□□ -0.99
GGA3-223ENST00000621870 DPPA4Q7L190 304 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 TMIEQ8NEW7 156 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 EDAQ92838 391 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 TBX5Q99593 518 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 ZFYVE21Q9BQ24 234 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 ZBTB26Q9HCK0 441 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 PRSS16Q9NQE7 514 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 PRODH2Q9UF12 536 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 HS3ST2Q9Y278 367 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 CACNA1HO95180 2353 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 FAM92AA1XBS5 289 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 SDHDO14521 159 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 GP1BBP13224 206 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 ITGA3P26006 1051 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 PDHA2P29803 388 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 SYT16Q17RD7 645 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 C6orf89Q6UWU4 347 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 UNC5DQ6UXZ4 953 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 CYS1Q717R9 158 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 LMNTD1Q8N9Z9 388 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 ENKURQ8TC29 256 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 WFDC5Q8TCV5 224 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 CD200R1Q8TD46 325 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 BCL7CQ8WUZ0 217 aaPredicted RBP8.88□□□□□ -0.99
GGA3-223ENST00000621870 MPP4Q96JB8 637 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 ZSWIM3Q96MP5 696 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 MACROD1Q9BQ69 325 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 SLC12A9Q9BXP2 914 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 ACTL8Q9H568 366 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 NFKBIL1Q9UBC1 381 aaPredicted RBP8.88□□□□□ -0.99
GGA3-223ENST00000621870 DNAJB9Q9UBS3 223 aa8.88□□□□□ -0.99
GGA3-223ENST00000621870 E7EQ34 232 aa8.87□□□□□ -0.99
GGA3-223ENST00000621870 PDLIM1O00151 329 aa8.87□□□□□ -0.99
GGA3-223ENST00000621870 CACNG3O60359 315 aa8.87□□□□□ -0.99
GGA3-223ENST00000621870 CPNE3O75131 537 aaKnown RBP8.87□□□□□ -0.99
GGA3-223ENST00000621870 CXCL10P02778 98 aa8.87□□□□□ -0.99
GGA3-223ENST00000621870 NR4A1P22736 598 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms