RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 MGLLQ99685 303 aa13.48□□□□□ -0.25
COL6A1-207ENST00000612273 CEP44Q9C0F1 390 aa13.48□□□□□ -0.25
COL6A1-207ENST00000612273 IFT52Q9Y366 437 aa13.48□□□□□ -0.25
COL6A1-207ENST00000612273 KCNE2Q9Y6J6 123 aa13.48□□□□□ -0.25
COL6A1-207ENST00000612273 TRBC2A0A5B9 178 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 WASHC1A8K0Z3 465 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 TMEM229AB2RXF0 380 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 GFYI3L273 518 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 LEFTY2O00292 366 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 CDK1P06493 297 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 TNNI3P19429 210 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 RGS6P49758 472 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 CDK6Q00534 326 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 SMU1Q2TAY7 513 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 MPPE1Q53F39 396 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 PAQR6Q6TCH4 344 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 WASH2PQ6VEQ5 465 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 WDR53Q7Z5U6 358 aaPredicted RBP13.47□□□□□ -0.25
COL6A1-207ENST00000612273 IQCF1Q8N6M8 205 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 OR8J2Q8NGG1 315 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 DNAJB8Q8NHS0 232 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 IPCEF1Q8WWN9 437 aaPredicted RBP13.47□□□□□ -0.25
COL6A1-207ENST00000612273 MIEF1Q9NQG6 463 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 EXO1Q9UQ84 846 aaKnown RBP13.47□□□□□ -0.25
COL6A1-207ENST00000612273 MYO10Q9HD67 2058 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 ZW10O43264 779 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 SGTAO43765 313 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 NME6O75414 186 aaPredicted RBP13.47□□□□□ -0.25
COL6A1-207ENST00000612273 DNAJB5O75953 348 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 GASTP01350 101 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 CATP04040 527 aaKnown RBP13.47□□□□□ -0.25
COL6A1-207ENST00000612273 ALPPL2P10696 532 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 GRK3P35626 688 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 GCNT6Q5T4J0 391 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 ELMOD1Q8N336 334 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 SLC46A2Q9BY10 475 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 TIGARQ9NQ88 270 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 SLC25A13Q9UJS0 675 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 ADAMDEC1O15204 470 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 CCNKO75909 580 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 MED26O95402 600 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 POP4O95707 220 aaKnown RBP13.47□□□□□ -0.25
COL6A1-207ENST00000612273 TBPL1P62380 186 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 LSM11P83369 360 aaKnown RBP eCLIP13.47□□□□□ -0.25
COL6A1-207ENST00000612273 HSPB3Q12988 150 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 GDPD4Q6W3E5 623 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 ZNF783Q6ZMS7 281 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 NEK10Q6ZWH5 1172 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 SLC46A3Q7Z3Q1 461 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 DDX53Q86TM3 631 aaKnown RBP13.47□□□□□ -0.25
COL6A1-207ENST00000612273 TCEAL4Q96EI5 215 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 GABARAPL1Q9H0R8 117 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 ANKMY1Q9P2S6 941 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 WDR37Q9Y2I8 494 aa13.47□□□□□ -0.25
COL6A1-207ENST00000612273 MYO9BQ13459 2157 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 KIAA0100Q14667 2235 aaKnown RBP13.46□□□□□ -0.25
COL6A1-207ENST00000612273 ZNF197O14709 1029 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 OR10H3O60404 316 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 FHP07954 510 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 ZNF8P17098 575 aaPredicted RBP13.46□□□□□ -0.25
COL6A1-207ENST00000612273 MAPK8P45983 427 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 PRSS53Q2L4Q9 553 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 ZNF284Q2VY69 593 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 ZNF697Q5TEC3 545 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 Q6ZNB5 142 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 USP43Q70EL4 1123 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 GDPD3Q7L5L3 318 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 CBARPQ8N350 705 aaPredicted RBP13.46□□□□□ -0.25
COL6A1-207ENST00000612273 OVCA2Q8WZ82 227 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 SLC35B4Q969S0 331 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 AP2M1Q96CW1 435 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 NEDD4LQ96PU5 975 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 MMP27Q9H306 513 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 ELAC1Q9H777 363 aaKnown RBP13.46□□□□□ -0.25
COL6A1-207ENST00000612273 K7ESM1 405 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 SCAMP1O15126 338 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 LRG1P02750 347 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 BCHEP06276 602 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 AP1S2P56377 157 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 UBE2UQ5VVX9 321 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 LHX8Q68G74 356 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 OR2A12Q8NGT7 310 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 FIBINQ8TAL6 211 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 ZNF480Q8WV37 535 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 OR2AG1Q9H205 316 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 HMX1Q9NP08 348 aaPredicted RBP13.46□□□□□ -0.25
COL6A1-207ENST00000612273 HCFC2Q9Y5Z7 792 aa13.46□□□□□ -0.25
COL6A1-207ENST00000612273 TRBV4-1A0A0J9YWV2 114 aa13.45□□□□□ -0.26
COL6A1-207ENST00000612273 C1orf226A1L170 272 aa13.45□□□□□ -0.26
COL6A1-207ENST00000612273 CLDN24A6NM45 220 aa13.45□□□□□ -0.26
COL6A1-207ENST00000612273 SOD2P04179 222 aa13.45□□□□□ -0.26
COL6A1-207ENST00000612273 IL3P08700 152 aa13.45□□□□□ -0.26
COL6A1-207ENST00000612273 TIA1P31483 386 aaKnown RBP eCLIP13.45□□□□□ -0.26
COL6A1-207ENST00000612273 TMEM115Q12893 351 aaPredicted RBP13.45□□□□□ -0.26
COL6A1-207ENST00000612273 FAM214AQ32MH5 1076 aa13.45□□□□□ -0.26
COL6A1-207ENST00000612273 GGTA1PQ4G0N0 100 aa13.45□□□□□ -0.26
COL6A1-207ENST00000612273 LIPJQ5W064 366 aa13.45□□□□□ -0.26
COL6A1-207ENST00000612273 MED27Q6P2C8 311 aa13.45□□□□□ -0.26
COL6A1-207ENST00000612273 ZNF513Q8N8E2 541 aaPredicted RBP13.45□□□□□ -0.26
COL6A1-207ENST00000612273 SPATA6Q9NWH7 488 aaPredicted RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms