RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 TSPAN10Q9H1Z9 355 aaPredicted RBP7.13□□□□□ -1.27
CUX1-219ENST00000606749 RHBGQ9H310 441 aa7.13□□□□□ -1.27
CUX1-219ENST00000606749 RHOJQ9H4E5 214 aa7.13□□□□□ -1.27
CUX1-219ENST00000606749 NT5DC2Q9H857 520 aa7.13□□□□□ -1.27
CUX1-219ENST00000606749 POPDC3Q9HBV1 291 aa7.13□□□□□ -1.27
CUX1-219ENST00000606749 GPAMQ9HCL2 828 aa7.13□□□□□ -1.27
CUX1-219ENST00000606749 SMYD2Q9NRG4 433 aa7.13□□□□□ -1.27
CUX1-219ENST00000606749 NSMCE4AQ9NXX6 385 aa7.13□□□□□ -1.27
CUX1-219ENST00000606749 RNF14Q9UBS8 474 aa7.13□□□□□ -1.27
CUX1-219ENST00000606749 SH3BGRL2Q9UJC5 107 aa7.13□□□□□ -1.27
CUX1-219ENST00000606749 TINAGQ9UJW2 476 aa7.13□□□□□ -1.27
CUX1-219ENST00000606749 NPIPA1Q9UND3 350 aa7.13□□□□□ -1.27
CUX1-219ENST00000606749 MTO1Q9Y2Z2 717 aaKnown RBP7.13□□□□□ -1.27
CUX1-219ENST00000606749 MMACHCQ9Y4U1 282 aa7.13□□□□□ -1.27
CUX1-219ENST00000606749 A0A0G2JN53 185 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 NCF1BA6NI72 391 aaPredicted RBP7.12□□□□□ -1.27
CUX1-219ENST00000606749 NCF1CA8MVU1 366 aaPredicted RBP7.12□□□□□ -1.27
CUX1-219ENST00000606749 CXorf49A8MYA2 514 aaPredicted RBP7.12□□□□□ -1.27
CUX1-219ENST00000606749 FCHO1O14526 889 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 TAPBPO15533 448 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 ERI3O43414 337 aaKnown RBP7.12□□□□□ -1.27
CUX1-219ENST00000606749 NME2P1O60361 137 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 PRAMEF4O60810 478 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 SLC25A12O75746 678 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 TBX6O95947 436 aaPredicted RBP7.12□□□□□ -1.27
CUX1-219ENST00000606749 ESRRAP11474 423 aaPredicted RBP7.12□□□□□ -1.27
CUX1-219ENST00000606749 NCF1P14598 390 aaPredicted RBP7.12□□□□□ -1.27
CUX1-219ENST00000606749 AGAP20933 346 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 NME2P22392 152 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 HTR1EP28566 365 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 TNFRSF8P28908 595 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 SSTR1P30872 391 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 HNRNPH1P31943 449 aaKnown RBP7.12□□□□□ -1.27
CUX1-219ENST00000606749 GGT5P36269 586 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 HLCSP50747 726 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 GPR143P51810 404 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 SLC12A2P55011 1212 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 MRPS25P82663 173 aaKnown RBP7.12□□□□□ -1.27
CUX1-219ENST00000606749 ADORA2A-AS1P86434 159 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 ILF2Q12905 390 aaKnown RBP7.12□□□□□ -1.27
CUX1-219ENST00000606749 SLBPQ14493 270 aaKnown RBP eCLIP7.12□□□□□ -1.27
CUX1-219ENST00000606749 TGFBIQ15582 683 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 CDKL4Q5MAI5 379 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 PRAMEF9Q5VWM5 478 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 RPTNQ6XPR3 784 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 FRA10AC1Q70Z53 315 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 CYS1Q717R9 158 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 ADAMTSL2Q86TH1 951 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 GPSM1Q86YR5 675 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 SCUBE1Q8IWY4 988 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 MCEMP1Q8IX19 187 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.12□□□□□ -1.276e-7■■■■■ 139.2
CUX1-219ENST00000606749 KRT78Q8N1N4 520 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 FAM98AQ8NCA5 519 aaKnown RBP7.12□□□□□ -1.27
CUX1-219ENST00000606749 BBOF1Q8ND07 529 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 TTLQ8NG68 377 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 PYROXD1Q8WU10 500 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 GAL3ST3Q96A11 431 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 ESAMQ96AP7 390 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 SEC16BQ96JE7 1060 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 MAGED4Q96JG8 741 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 FAR2Q96K12 515 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 QRFPRQ96P65 431 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 KRT12Q99456 494 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 NPLQ9BXD5 320 aaPredicted RBP7.12□□□□□ -1.27
CUX1-219ENST00000606749 CAPS2Q9BXY5 557 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 DEFB126Q9BYW3 111 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 PITHD1Q9GZP4 211 aaPredicted RBP7.12□□□□□ -1.27
CUX1-219ENST00000606749 RUBCNLQ9H714 662 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 CHST11Q9NPF2 352 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 PNO1Q9NRX1 252 aaKnown RBP7.12□□□□□ -1.27
CUX1-219ENST00000606749 ZNF490Q9ULM2 529 aaPredicted RBP7.12□□□□□ -1.27
CUX1-219ENST00000606749 PPIEQ9UNP9 301 aaKnown RBP7.12□□□□□ -1.27
CUX1-219ENST00000606749 MEMO1Q9Y316 297 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 CLDN16Q9Y5I7 305 aa7.12□□□□□ -1.27
CUX1-219ENST00000606749 TRBV11-1A0A0K0K1C0 115 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 ANKDD1BA6NHY2 528 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 TGFBR3LH3BV60 316 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 CYR61O00622 381 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 CLDN4O14493 209 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 CLGNO14967 610 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 FANCGO15287 622 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 ZNHIT1O43257 154 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 CLEC3AO75596 197 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 MYO1DO94832 1006 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 CCDC166P0CW27 439 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 CD1DP15813 335 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 GSTM2P28161 218 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 KCNC1P48547 511 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 CLCN2P51788 898 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 SMSP52788 366 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 PLA2G16P53816 162 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 HSD17B7P56937 341 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 RAB38P57729 211 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 NAA30Q147X3 362 aaPredicted RBP7.11□□□□□ -1.27
CUX1-219ENST00000606749 CDSNQ15517 529 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 TERF2Q15554 542 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 OR4D1Q15615 310 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 ADPRMQ3LIE5 342 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 FBXO48Q5FWF7 155 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms