RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 RBPJQ06330 500 aa14.81□□□□□ -0.04
VRK3-221ENST00000600284 NAB1Q13506 487 aa14.81□□□□□ -0.04
VRK3-221ENST00000600284 LAPTM5Q13571 262 aa14.81□□□□□ -0.04
VRK3-221ENST00000600284 TERF2Q15554 542 aa14.81□□□□□ -0.04
VRK3-221ENST00000600284 OR1C1Q15619 314 aa14.81□□□□□ -0.04
VRK3-221ENST00000600284 ZRSR2Q15696 482 aaKnown RBP14.81□□□□□ -0.04
VRK3-221ENST00000600284 ZNF572Q7Z3I7 529 aaPredicted RBP14.81□□□□□ -0.04
VRK3-221ENST00000600284 CTAGE3PQ8IX95 158 aa14.81□□□□□ -0.04
VRK3-221ENST00000600284 ARMC10Q8N2F6 343 aa14.81□□□□□ -0.04
VRK3-221ENST00000600284 SPATA6LQ8N4H0 392 aa14.81□□□□□ -0.04
VRK3-221ENST00000600284 TMEM178AQ8NBL3 297 aa14.81□□□□□ -0.04
VRK3-221ENST00000600284 NFAM1Q8NET5 270 aaPredicted RBP14.81□□□□□ -0.04
VRK3-221ENST00000600284 STAG3L4Q8TBR4 150 aa14.81□□□□□ -0.04
VRK3-221ENST00000600284 FBXO25Q8TCJ0 367 aa14.81□□□□□ -0.04
VRK3-221ENST00000600284 PTCD3Q96EY7 689 aaKnown RBP14.81□□□□□ -0.04
VRK3-221ENST00000600284 SIGLEC12Q96PQ1 595 aa14.81□□□□□ -0.04
VRK3-221ENST00000600284 EFCAB11Q9BUY7 163 aa14.81□□□□□ -0.04
VRK3-221ENST00000600284 UNKQ9C0B0 810 aaKnown RBP14.81□□□□□ -0.04
VRK3-221ENST00000600284 CDCP1Q9H5V8 836 aa14.81□□□□□ -0.04
VRK3-221ENST00000600284 TRIM45Q9H8W5 580 aaPredicted RBP14.81□□□□□ -0.04
VRK3-221ENST00000600284 NECTIN3Q9NQS3 549 aa14.81□□□□□ -0.04
VRK3-221ENST00000600284 CD274Q9NZQ7 290 aa14.81□□□□□ -0.04
VRK3-221ENST00000600284 SEC14L3Q9UDX4 400 aa14.81□□□□□ -0.04
VRK3-221ENST00000600284 SVILO95425 2214 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 ASPDHA6ND91 283 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 FAM227AF5H4B4 570 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 CLDN4O14493 209 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 ERI3O43414 337 aaKnown RBP14.8□□□□□ -0.04
VRK3-221ENST00000600284 UNC5CO95185 931 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 S100BP04271 92 aaPredicted RBP14.8□□□□□ -0.04
VRK3-221ENST00000600284 MAOAP21397 527 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 MST1P26927 711 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 CRABP2P29373 138 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 EEF1DP29692 281 aaKnown RBP14.8□□□□□ -0.04
VRK3-221ENST00000600284 CASP2P42575 452 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 MAGEA4P43358 317 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 HSPA7P48741 367 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 HSD17B7P56937 341 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 RAB38P57729 211 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 KCNK10P57789 538 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 RUNX2Q13950 521 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 OR4D1Q15615 310 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 TBCCQ15814 346 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 PDK4Q16654 411 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 HIST2H2ACQ16777 129 aaPredicted RBP14.8□□□□□ -0.04
VRK3-221ENST00000600284 KBTBD12Q3ZCT8 623 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 KRTCAP3Q53RY4 240 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 PAGE2BQ5JRK9 111 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 HIST2H2AA3Q6FI13 130 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 SPINK14Q6IE38 97 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 TRIM40Q6P9F5 258 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 CYP4X1Q8N118 509 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 SLC34A3Q8N130 599 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 FAM98AQ8NCA5 519 aaKnown RBP14.8□□□□□ -0.04
VRK3-221ENST00000600284 OR2L5Q8NG80 312 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 CCT6BQ92526 530 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 REXO4Q9GZR2 422 aaKnown RBP14.8□□□□□ -0.04
VRK3-221ENST00000600284 RHBGQ9H310 441 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 NMRAL1Q9HBL8 299 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 RNF112Q9ULX5 631 aa14.8□□□□□ -0.04
VRK3-221ENST00000600284 MRPS33Q9Y291 106 aaKnown RBP14.8□□□□□ -0.04
VRK3-221ENST00000600284 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.8□□□□□ -0.04
VRK3-221ENST00000600284 B3GALT2O43825 422 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 MAN1A2O60476 641 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 NEURL1O76050 574 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 SP1P08047 785 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 HNRNPH1P31943 449 aaKnown RBP14.79□□□□□ -0.04
VRK3-221ENST00000600284 TRHRP34981 398 aaPredicted RBP14.79□□□□□ -0.04
VRK3-221ENST00000600284 DCTP40126 519 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 MLF1P58340 268 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 OC90Q02509 493 aaPredicted RBP14.79□□□□□ -0.04
VRK3-221ENST00000600284 PCDH1Q08174 1060 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 TGM3Q08188 693 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 DOC2AQ14183 400 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 E2F2Q14209 437 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 RCN2Q14257 317 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 XKR6Q5GH73 641 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 SLC25A25Q6KCM7 469 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 MTFR2Q6P444 385 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 SYT10Q6XYQ8 523 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 LRRC70Q7Z2Q7 622 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 CCDC91Q7Z6B0 441 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 ISCA2Q86U28 154 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 FJX1Q86VR8 437 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 SCUBE1Q8IWY4 988 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 ZNF595Q8IYB9 648 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 PPM1NQ8N819 430 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 SNX31Q8N9S9 440 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 SRFBP1Q8NEF9 429 aaKnown RBP14.79□□□□□ -0.04
VRK3-221ENST00000600284 B3GNT7Q8NFL0 401 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 THAP3Q8WTV1 239 aaPredicted RBP14.79□□□□□ -0.04
VRK3-221ENST00000600284 QRFPRQ96P65 431 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 SERINC2Q96SA4 455 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 CD244Q9BZW8 370 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 ROGDIQ9GZN7 287 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 ANKRD10Q9NXR5 420 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 LRFN1Q9P244 771 aa14.79□□□□□ -0.04
VRK3-221ENST00000600284 ZNF490Q9ULM2 529 aaPredicted RBP14.79□□□□□ -0.04
VRK3-221ENST00000600284 PPIEQ9UNP9 301 aaKnown RBP14.79□□□□□ -0.04
VRK3-221ENST00000600284 UNC79Q9P2D8 2635 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms