RNA–Protein interactions for RNA: ENST00000599223.5

IRF3-223, Transcript of interferon regulatory factor 3, human

TSL 1 (best) BASIC

Gene IRF3, Length 1,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-223	ENST00000599223	DDX47	Q9H0S4	455 aa	Known RBP	13.73	□□□□□ -0.21
IRF3-223	ENST00000599223	RUBCNL	Q9H714	662 aa		13.73	□□□□□ -0.21
IRF3-223	ENST00000599223	ASIC3	Q9UHC3	531 aa		13.73	□□□□□ -0.21
IRF3-223	ENST00000599223	ZFP69B	Q9UJL9	534 aa		13.73	□□□□□ -0.21
IRF3-223	ENST00000599223	ZNF223	Q9UK11	482 aa	Predicted RBP	13.73	□□□□□ -0.21
IRF3-223	ENST00000599223	PSAT1	Q9Y617	370 aa		13.73	□□□□□ -0.21
IRF3-223	ENST00000599223	NPEPPSL1	A6NEC2	478 aa		13.72	□□□□□ -0.21
IRF3-223	ENST00000599223		A8MUA0	341 aa		13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	TGFBR3L	H3BV60	316 aa		13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	CLDN14	O95500	239 aa		13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	TTC4	O95801	387 aa		13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	SMIM10L1	P0DMW3	83 aa		13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	ABO	P16442	354 aa		13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	ZNF37A	P17032	561 aa	Predicted RBP	13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	IVD	P26440	423 aa		13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	PPP2R1B	P30154	601 aa		13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	NR0B1	P51843	470 aa	Known RBP	13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	DOLPP1	Q86YN1	238 aa		13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	APCDD1L	Q8NCL9	501 aa		13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	CREB3L4	Q8TEY5	395 aa		13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	GRK7	Q8WTQ7	553 aa		13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	MTFMT	Q96DP5	389 aa	Known RBP	13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	SMIM10	Q96HG1	83 aa		13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	DMRTA2	Q96SC8	542 aa		13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	RHBG	Q9H310	441 aa		13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	TRIM45	Q9H8W5	580 aa	Predicted RBP	13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	CHMP2B	Q9UQN3	213 aa		13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	CLDN16	Q9Y5I7	305 aa		13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	HCFC1	P51610	2035 aa		13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	DNAJC13	O75165	2243 aa		13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	EML6	Q6ZMW3	1958 aa		13.72	□□□□□ -0.21
IRF3-223	ENST00000599223	INTS1	Q8N201	2190 aa	Known RBP	13.71	□□□□□ -0.21
IRF3-223	ENST00000599223		A0A0G2JN53	185 aa		13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	CDC7	O00311	574 aa		13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	PRMT3	O60678	531 aa		13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	ENO2	P09104	434 aa	Predicted RBP	13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	TRHR	P34981	398 aa	Predicted RBP	13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	AHR	P35869	848 aa		13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	ELK3	P41970	407 aa		13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	CYB561	P49447	251 aa		13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	HNRNPF	P52597	415 aa	Known RBP	13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	SMS	P52788	366 aa		13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	CSHL1	Q14406	222 aa		13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	C18orf21	Q32NC0	220 aa	Predicted RBP	13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	TOR1AIP1	Q5JTV8	583 aa		13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	STEAP4	Q687X5	459 aa		13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	ABHD13	Q7L211	337 aa		13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	THOC6	Q86W42	341 aa	Known RBP	13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	IFT20	Q8IY31	132 aa		13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	CA13	Q8N1Q1	262 aa		13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	ARMC10	Q8N2F6	343 aa		13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	GHDC	Q8N2G8	530 aa		13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	MARVELD2	Q8N4S9	558 aa		13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	ACBD4	Q8NC06	268 aa		13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	FAM98A	Q8NCA5	519 aa	Known RBP	13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	TMEM52	Q8NDY8	209 aa		13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	ANKRD7	Q92527	254 aa		13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	PARD6B	Q9BYG5	372 aa		13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	RAB17	Q9H0T7	212 aa		13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	PPAN	Q9NQ55	473 aa	Known RBP	13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	PRDM9	Q9NQV7	894 aa		13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	SLC22A14	Q9Y267	594 aa		13.71	□□□□□ -0.21
IRF3-223	ENST00000599223	MED13L	Q71F56	2210 aa		13.71	□□□□□ -0.22
IRF3-223	ENST00000599223	TRBV11-1	A0A0K0K1C0	115 aa		13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	MLYCD	O95822	493 aa		13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	RNH1	P13489	461 aa	Known RBP	13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	HNRNPH1	P31943	449 aa	Known RBP	13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	MEOX1	P50221	254 aa		13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	HLCS	P50747	726 aa		13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	SKP1	P63208	163 aa		13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	ADNP2	Q6IQ32	1131 aa		13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	FAM45BP	Q6NSW5	357 aa		13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	WDR93	Q6P2C0	686 aa		13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	NXPE4	Q6UWF7	544 aa		13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	C16orf47	Q6ZP98	133 aa	Predicted RBP	13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	HORMAD2	Q8N7B1	307 aa		13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	FAM45A	Q8TCE6	357 aa		13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	PHF10	Q8WUB8	498 aa	Known RBP	13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	ATL1	Q8WXF7	558 aa		13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	SLCO2A1	Q92959	643 aa		13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	LRRC1	Q9BTT6	524 aa		13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	ANKZF1	Q9H8Y5	726 aa		13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	PELI2	Q9HAT8	420 aa		13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	ZFAT	Q9P243	1243 aa		13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	VWA7	Q9Y334	891 aa		13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	UTP11	Q9Y3A2	253 aa	Known RBP	13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	HRH3	Q9Y5N1	445 aa		13.7	□□□□□ -0.22
IRF3-223	ENST00000599223	PHF3	Q92576	2039 aa	Known RBP	13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	CCDC151	A5D8V7	595 aa		13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	PABPN1L	A6NDY0	278 aa	Known RBP	13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	FAM187A	A6NFU0	413 aa		13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	TP73	O15350	636 aa		13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	PRKN	O60260	465 aa	Predicted RBP	13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	MYO1D	O94832	1006 aa		13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	TBX6	O95947	436 aa	Predicted RBP	13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	GPR85	P60893	370 aa		13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	DR1	Q01658	176 aa		13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	FASTKD3	Q14CZ7	662 aa	Known RBP	13.69	□□□□□ -0.22
IRF3-223	ENST00000599223	RBBP5	Q15291	538 aa	Known RBP	13.69	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms