RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 TRAF3Q13114 568 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 RAPSNQ13702 412 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 HIST2H2ACQ16777 129 aaPredicted RBP15.19■□□□□ 0.02
TRIM28-213ENST00000598355 MINDY4Q4G0A6 757 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 HIST2H2AA3Q6FI13 130 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 FAAH2Q6GMR7 532 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 TRIM40Q6P9F5 258 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 PRICKLE2Q7Z3G6 844 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 UBE3DQ7Z6J8 389 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 ANKRD37Q7Z713 158 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 Q8NA96 180 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 AENQ8WTP8 325 aaKnown RBP15.19■□□□□ 0.02
TRIM28-213ENST00000598355 TUBB6Q9BUF5 446 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 NTMT1Q9BV86 223 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 RBCK1Q9BYM8 510 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 PRDM7Q9NQW5 492 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 TMEM216Q9P0N5 145 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 C19orf25Q9UFG5 118 aaPredicted RBP15.19■□□□□ 0.02
TRIM28-213ENST00000598355 ADGRE2Q9UHX3 823 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 CLDN16Q9Y5I7 305 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 MYO18BQ8IUG5 2567 aa15.19■□□□□ 0.02
TRIM28-213ENST00000598355 PRRC2CQ9Y520 2896 aaKnown RBP15.18■□□□□ 0.02
TRIM28-213ENST00000598355 A0A088AWK7 358 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 OR2W5A6NFC9 320 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 OR7A17O14581 309 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 SMIM24O75264 130 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 SERPINA7P05543 415 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 GSTA1P08263 222 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 NUDT17P0C025 328 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 ZNF10P21506 573 aaPredicted RBP15.18■□□□□ 0.02
TRIM28-213ENST00000598355 HSD17B3P37058 310 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 ARFIP1P53367 373 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 RUNX2Q13950 521 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 ABRAXAS2Q15018 415 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 GGTA1PQ4G0N0 100 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 TMEM35AQ53FP2 167 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 SLC6A19Q695T7 634 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 PLAG1Q6DJT9 500 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 ZNF793Q6ZN11 406 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 CPEB2Q7Z5Q1 589 aaKnown RBP15.18■□□□□ 0.02
TRIM28-213ENST00000598355 SCUBE1Q8IWY4 988 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 PARP9Q8IXQ6 854 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 TEX19Q8NA77 164 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 WDR20Q8TBZ3 569 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 ADAMTS18Q8TE60 1221 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 ZNF483Q8TF39 744 aaPredicted RBP15.18■□□□□ 0.02
TRIM28-213ENST00000598355 UBLCP1Q8WVY7 318 aaPredicted RBP15.18■□□□□ 0.02
TRIM28-213ENST00000598355 METTL21AQ8WXB1 218 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 CCT6BQ92526 530 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 TSLPQ969D9 159 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 PHF21BQ96EK2 531 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 SCYL1Q96KG9 808 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 NSUN5Q96P11 429 aaKnown RBP15.18■□□□□ 0.02
TRIM28-213ENST00000598355 KCNC2Q96PR1 638 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 SERINC2Q96SA4 455 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 CCDC77Q9BR77 488 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 IPPKQ9H8X2 491 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 ACTR8Q9H981 624 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 ZBTB20Q9HC78 741 aaPredicted RBP15.18■□□□□ 0.02
TRIM28-213ENST00000598355 DMRT3Q9NQL9 472 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 ANGPTL3Q9Y5C1 460 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 PCDHGA11Q9Y5H2 935 aa15.18■□□□□ 0.02
TRIM28-213ENST00000598355 A0A0G2JN53 185 aa15.17■□□□□ 0.02
TRIM28-213ENST00000598355 TCRBV16S1A1N1A0A5B0 115 aa15.17■□□□□ 0.02
TRIM28-213ENST00000598355 J3QKU1 62 aa15.17■□□□□ 0.02
TRIM28-213ENST00000598355 CDC123O75794 336 aaPredicted RBP15.17■□□□□ 0.02
TRIM28-213ENST00000598355 TSFMP43897 325 aaKnown RBP15.17■□□□□ 0.02
TRIM28-213ENST00000598355 PLA2G16P53816 162 aa15.17■□□□□ 0.02
TRIM28-213ENST00000598355 MTTPP55157 894 aa15.17■□□□□ 0.02
TRIM28-213ENST00000598355 RAB38P57729 211 aa15.17■□□□□ 0.02
TRIM28-213ENST00000598355 BTN3A2P78410 334 aa15.17■□□□□ 0.02
TRIM28-213ENST00000598355 TLE1Q04724 770 aa15.17■□□□□ 0.02
TRIM28-213ENST00000598355 NADK2Q4G0N4 442 aa15.17■□□□□ 0.02
TRIM28-213ENST00000598355 JMJD6Q6NYC1 403 aaPredicted RBP15.17■□□□□ 0.02
TRIM28-213ENST00000598355 KBTBD2Q8IY47 623 aa15.17■□□□□ 0.02
TRIM28-213ENST00000598355 SRFBP1Q8NEF9 429 aaKnown RBP15.17■□□□□ 0.02
TRIM28-213ENST00000598355 OR52B6Q8NGF0 335 aa15.17■□□□□ 0.02
TRIM28-213ENST00000598355 HUS1BQ8NHY5 278 aa15.17■□□□□ 0.02
TRIM28-213ENST00000598355 PPP4R1Q8TF05 950 aa15.17■□□□□ 0.02
TRIM28-213ENST00000598355 PNPLA2Q96AD5 504 aa15.17■□□□□ 0.02
TRIM28-213ENST00000598355 CMTM7Q96FZ5 175 aa15.17■□□□□ 0.02
TRIM28-213ENST00000598355 THOC3Q96J01 351 aaKnown RBP15.17■□□□□ 0.02
TRIM28-213ENST00000598355 F2RL3Q96RI0 385 aa15.17■□□□□ 0.02
TRIM28-213ENST00000598355 PSD3Q9NYI0 1048 aa15.17■□□□□ 0.02
TRIM28-213ENST00000598355 TBK1Q9UHD2 729 aa15.17■□□□□ 0.02
TRIM28-213ENST00000598355 DAPP1Q9UN19 280 aa15.17■□□□□ 0.02
TRIM28-213ENST00000598355 MMACHCQ9Y4U1 282 aa15.17■□□□□ 0.02
TRIM28-213ENST00000598355 RP1L1Q8IWN7 2480 aaPredicted RBP15.16■□□□□ 0.02
TRIM28-213ENST00000598355 RELNP78509 3460 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 B3GALT2O43825 422 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 CDH16O75309 829 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 CELA2AP08217 269 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 PYGBP11216 843 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 CERS1P27544 350 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 AP2B1P63010 937 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 TGM3Q08188 693 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 MFAP5Q13361 173 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 NSDHLQ15738 373 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 CRB2Q5IJ48 1285 aa15.16■□□□□ 0.02
TRIM28-213ENST00000598355 C10orf62Q5T681 223 aaPredicted RBP15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms