RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 QRFPRQ96P65 431 aa13.06□□□□□ -0.32
UPF1-205ENST00000598209 F2RL3Q96RI0 385 aa13.06□□□□□ -0.32
UPF1-205ENST00000598209 SMAD5Q99717 465 aaKnown RBP13.06□□□□□ -0.32
UPF1-205ENST00000598209 PARD6BQ9BYG5 372 aa13.06□□□□□ -0.32
UPF1-205ENST00000598209 ZNF700Q9H0M5 742 aa13.06□□□□□ -0.32
UPF1-205ENST00000598209 NOL11Q9H8H0 719 aaKnown RBP13.06□□□□□ -0.32
UPF1-205ENST00000598209 ZBTB26Q9HCK0 441 aa13.06□□□□□ -0.32
UPF1-205ENST00000598209 DCDC2Q9UHG0 476 aa13.06□□□□□ -0.32
UPF1-205ENST00000598209 ADGRE2Q9UHX3 823 aa13.06□□□□□ -0.32
UPF1-205ENST00000598209 RNF11Q9Y3C5 154 aa13.06□□□□□ -0.32
UPF1-205ENST00000598209 PCDHGA11Q9Y5H2 935 aa13.06□□□□□ -0.32
UPF1-205ENST00000598209 H0YIV9 168 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 PSMD12O00232 456 aaPredicted RBP13.05□□□□□ -0.32
UPF1-205ENST00000598209 SUV39H1O43463 412 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 B3GALT2O43825 422 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 KLHL41O60662 606 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 B4GALT2O60909 372 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 GLRA3O75311 464 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 SH3BGRLO75368 114 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 CLDN9O95484 217 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 TGFB1P01137 390 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 NUDT17P0C025 328 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 Q0VFX4 171 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 KLRB1Q12918 225 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 TRAF3Q13114 568 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 RUNX2Q13950 521 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 PCOLCEQ15113 449 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 CPSF6Q16630 551 aaKnown RBP eCLIP13.05□□□□□ -0.32
UPF1-205ENST00000598209 IRAK1BP1Q5VVH5 260 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 SH2D5Q6ZV89 423 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 RPS27LQ71UM5 84 aaKnown RBP13.05□□□□□ -0.32
UPF1-205ENST00000598209 PRICKLE2Q7Z3G6 844 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 CPEB2Q7Z5Q1 589 aaKnown RBP13.05□□□□□ -0.32
UPF1-205ENST00000598209 ANKRD37Q7Z713 158 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 RNF175Q8N4F7 328 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 L3MBTL4Q8NA19 623 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 TEX19Q8NA77 164 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 PLPP5Q8NEB5 264 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 SRFBP1Q8NEF9 429 aaKnown RBP13.05□□□□□ -0.32
UPF1-205ENST00000598209 OR52B6Q8NGF0 335 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 HUS1BQ8NHY5 278 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 ZNF483Q8TF39 744 aaPredicted RBP13.05□□□□□ -0.32
UPF1-205ENST00000598209 REPS1Q96D71 796 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 CMTM7Q96FZ5 175 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 THOC3Q96J01 351 aaKnown RBP13.05□□□□□ -0.32
UPF1-205ENST00000598209 CDK15Q96Q40 435 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 SERINC2Q96SA4 455 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 NPLQ9BXD5 320 aaPredicted RBP13.05□□□□□ -0.32
UPF1-205ENST00000598209 LHPPQ9H008 270 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 ZNF552Q9H707 407 aaPredicted RBP13.05□□□□□ -0.32
UPF1-205ENST00000598209 COPS7BQ9H9Q2 264 aaPredicted RBP13.05□□□□□ -0.32
UPF1-205ENST00000598209 SEMA4BQ9NPR2 832 aaPredicted RBP13.05□□□□□ -0.32
UPF1-205ENST00000598209 RIC8BQ9NVN3 520 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 C19orf25Q9UFG5 118 aaPredicted RBP13.05□□□□□ -0.32
UPF1-205ENST00000598209 ANAPC2Q9UJX6 822 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 TSC22D4Q9Y3Q8 395 aa13.05□□□□□ -0.32
UPF1-205ENST00000598209 CPAMD8Q8IZJ3 1885 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 IGHV3-20A0A0C4DH32 117 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 TLDC2A0PJX2 215 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 MAGEB17A8MXT2 336 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 FAM227AF5H4B4 570 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 SLC28A2O43868 658 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 DLX3O60479 287 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 ALPPP05187 535 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 ATP5F1P24539 256 aaPredicted RBP13.04□□□□□ -0.32
UPF1-205ENST00000598209 CERS1P27544 350 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 PIK3CBP42338 1070 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 MTTPP55157 894 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 RAB38P57729 211 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 HERVK_113P63132 956 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 PHEXP78562 749 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 IFFO1Q0D2I5 559 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 ABRAXAS2Q15018 415 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 ZRSR2Q15696 482 aaKnown RBP13.04□□□□□ -0.32
UPF1-205ENST00000598209 NSDHLQ15738 373 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 TMEM35AQ53FP2 167 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 COLEC12Q5KU26 742 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 KHDRBS2Q5VWX1 349 aaKnown RBP13.04□□□□□ -0.32
UPF1-205ENST00000598209 QSOX2Q6ZRP7 698 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 CHSY3Q70JA7 882 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 UBE3DQ7Z6J8 389 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 KBTBD2Q8IY47 623 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 RIBC1Q8N443 379 aaPredicted RBP13.04□□□□□ -0.32
UPF1-205ENST00000598209 TSLPQ969D9 159 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 KCNC2Q96PR1 638 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 MTERF1Q99551 399 aaKnown RBP13.04□□□□□ -0.32
UPF1-205ENST00000598209 TBCDQ9BTW9 1192 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 TUBB6Q9BUF5 446 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 NTMT1Q9BV86 223 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 C1QTNF3Q9BXJ4 246 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 ERVK-6Q9BXR3 956 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 OR51B5Q9H339 312 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 DMRT3Q9NQL9 472 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 PRDM7Q9NQW5 492 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 C5AR2Q9P296 337 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 EMCNQ9ULC0 261 aa13.04□□□□□ -0.32
UPF1-205ENST00000598209 SAP18O00422 153 aaKnown RBP13.03□□□□□ -0.32
UPF1-205ENST00000598209 RTCAO00442 366 aaKnown RBP13.03□□□□□ -0.32
UPF1-205ENST00000598209 PRMT3O60678 531 aa13.03□□□□□ -0.32
UPF1-205ENST00000598209 DPM1O60762 260 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms