RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 IGHV1-45A0A0A0MS14 117 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 TLDC2A0PJX2 215 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 H0YIV9 168 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 TGFBR3LH3BV60 316 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 SAP18O00422 153 aaKnown RBP10.5□□□□□ -0.73
VRK3-210ENST00000596121 PROCP04070 461 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 FHP07954 510 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 ACPPP15309 386 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 CERS1P27544 350 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 GSTM2P28161 218 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 CD97P48960 835 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 STXBP1P61764 594 aaKnown RBP10.5□□□□□ -0.73
VRK3-210ENST00000596121 SLC18A2Q05940 514 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 C19orf57Q0VDD7 668 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 DDX39BQ13838 428 aaKnown RBP10.5□□□□□ -0.73
VRK3-210ENST00000596121 ZRSR2Q15696 482 aaKnown RBP10.5□□□□□ -0.73
VRK3-210ENST00000596121 CPSF6Q16630 551 aaKnown RBP eCLIP10.5□□□□□ -0.73
VRK3-210ENST00000596121 TUBB8Q3ZCM7 444 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 LIPJQ5W064 366 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 METTL2BQ6P1Q9 378 aaKnown RBP10.5□□□□□ -0.73
VRK3-210ENST00000596121 LCA5Q86VQ0 697 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 MYLK4Q86YV6 388 aaPredicted RBP10.5□□□□□ -0.73
VRK3-210ENST00000596121 C4orf33Q8N1A6 199 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 WDR20Q8TBZ3 569 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 PSMF1Q92530 271 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 TBC1D20Q96BZ9 403 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 ZBTB9Q96C00 473 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 IMMP1LQ96LU5 166 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 TMEM237Q96Q45 408 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 OR1F2PQ96R84 312 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 MTERF1Q99551 399 aaKnown RBP10.5□□□□□ -0.73
VRK3-210ENST00000596121 SMAD5Q99717 465 aaKnown RBP10.5□□□□□ -0.73
VRK3-210ENST00000596121 NTMT1Q9BV86 223 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 REXO4Q9GZR2 422 aaKnown RBP10.5□□□□□ -0.73
VRK3-210ENST00000596121 ZNF700Q9H0M5 742 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 OR51B5Q9H339 312 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 ATP13A2Q9NQ11 1180 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 DMRT3Q9NQL9 472 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 KCMF1Q9P0J7 381 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 TMCO1Q9UM00 188 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 TSC22D4Q9Y3Q8 395 aa10.5□□□□□ -0.73
VRK3-210ENST00000596121 NUP210LQ5VU65 1888 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 CNTRLQ7Z7A1 2325 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 URADA6NGE7 173 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 MAGEB17A8MXT2 336 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 SUV39H1O43463 412 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 UGDHO60701 494 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 CDH16O75309 829 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 CLDN9O95484 217 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 HPP00738 406 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 GSTA1P08263 222 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 C8orf89P0DMQ9 161 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 CREB1P16220 341 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 KRT15P19012 456 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 KRT4P19013 534 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 MAOAP21397 527 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 CRHR1P34998 444 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 PGDP52209 483 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 PRKAA2P54646 552 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 RPS13P62277 151 aaKnown RBP10.49□□□□□ -0.73
VRK3-210ENST00000596121 AIMP2Q13155 320 aaKnown RBP10.49□□□□□ -0.73
VRK3-210ENST00000596121 MYBPC3Q14896 1274 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 NADK2Q4G0N4 442 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 ZNF678Q5SXM1 525 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 DEPDC1Q5TB30 811 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 MFSD4BQ5TF39 518 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 KHDRBS2Q5VWX1 349 aaKnown RBP10.49□□□□□ -0.73
VRK3-210ENST00000596121 LETMD1Q6P1Q0 360 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 MREGQ8N565 214 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 RBMXL3Q8N7X1 1067 aaKnown RBP10.49□□□□□ -0.73
VRK3-210ENST00000596121 CLEC1AQ8NC01 280 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 OR4F6Q8NGB9 312 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 TRPC4APQ8TEL6 797 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 UBE2E3Q969T4 207 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 MTFMTQ96DP5 389 aaKnown RBP10.49□□□□□ -0.73
VRK3-210ENST00000596121 CSF3RQ99062 836 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 ZNF717Q9BY31 904 aaPredicted RBP10.49□□□□□ -0.73
VRK3-210ENST00000596121 PPCSQ9HAB8 311 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 CLK4Q9HAZ1 481 aaKnown RBP10.49□□□□□ -0.73
VRK3-210ENST00000596121 NECTIN3Q9NQS3 549 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 FARSBQ9NSD9 589 aaKnown RBP10.49□□□□□ -0.73
VRK3-210ENST00000596121 GPR83Q9NYM4 423 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 DCDC2Q9UHG0 476 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 LGALS13Q9UHV8 139 aa10.49□□□□□ -0.73
VRK3-210ENST00000596121 HELZ2Q9BYK8 2649 aaKnown RBP10.49□□□□□ -0.73
VRK3-210ENST00000596121 IGKV3D-11A0A0A0MRZ8 115 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 NSG1A0A0A6YYJ2 146 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 PYCARD-AS1I3L0S3 204 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 CYR61O00622 381 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 PLIN3O60664 434 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 SEC24DO94855 1032 aaPredicted RBP10.48□□□□□ -0.73
VRK3-210ENST00000596121 PRR35P0CG20 571 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 RNH1P13489 461 aaKnown RBP10.48□□□□□ -0.73
VRK3-210ENST00000596121 PLA2G2AP14555 144 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 IMPDH1P20839 514 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 IL10P22301 178 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 ATP5F1P24539 256 aaPredicted RBP10.48□□□□□ -0.73
VRK3-210ENST00000596121 ATP5A1P25705 553 aaKnown RBP10.48□□□□□ -0.73
VRK3-210ENST00000596121 ITGA3P26006 1051 aa10.48□□□□□ -0.73
VRK3-210ENST00000596121 PIK3CBP42338 1070 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms