RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 GPN3Q9UHW5 284 aaPredicted RBP12.92□□□□□ -0.34
VMP1-210ENST00000589823 ACSL6Q9UKU0 697 aa12.92□□□□□ -0.34
VMP1-210ENST00000589823 PADI1Q9ULC6 663 aa12.92□□□□□ -0.34
VMP1-210ENST00000589823 MAU2Q9Y6X3 613 aa12.92□□□□□ -0.34
VMP1-210ENST00000589823 SPTBN2O15020 2390 aa12.92□□□□□ -0.34
VMP1-210ENST00000589823 TEX51A0A1B0GUA7 166 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 ARHGAP10A1A4S6 786 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.91□□□□□ -0.34
VMP1-210ENST00000589823 C9J4A7 227 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 RTCAO00442 366 aaKnown RBP12.91□□□□□ -0.34
VMP1-210ENST00000589823 RAD1O60671 282 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 EDF1O60869 148 aaKnown RBP12.91□□□□□ -0.34
VMP1-210ENST00000589823 RDH16O75452 317 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 B3GALT4O96024 378 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 HIST1H1TP22492 207 aaPredicted RBP12.91□□□□□ -0.34
VMP1-210ENST00000589823 ATP5A1P25705 553 aaKnown RBP12.91□□□□□ -0.34
VMP1-210ENST00000589823 OR1D4P47884 311 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 GYS2P54840 703 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 SNRPNP63162 240 aaKnown RBP12.91□□□□□ -0.34
VMP1-210ENST00000589823 TBL3Q12788 808 aaKnown RBP12.91□□□□□ -0.34
VMP1-210ENST00000589823 DSG2Q14126 1118 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 XKR7Q5GH72 579 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 TIPARPQ7Z3E1 657 aaKnown RBP12.91□□□□□ -0.34
VMP1-210ENST00000589823 COMMD6Q7Z4G1 85 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 NUDT13Q86X67 352 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 PDSS2Q86YH6 399 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 DTWD1Q8N5C7 304 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 C1orf52Q8N6N3 182 aaKnown RBP12.91□□□□□ -0.34
VMP1-210ENST00000589823 ACOT4Q8N9L9 421 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 CHTF18Q8WVB6 975 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.91□□□□□ -0.34
VMP1-210ENST00000589823 TUBGCP3Q96CW5 907 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 PPP1R36Q96LQ0 422 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 PPP3R2Q96LZ3 170 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 YIPF2Q9BWQ6 316 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 NPLQ9BXD5 320 aaPredicted RBP12.91□□□□□ -0.34
VMP1-210ENST00000589823 LRTM1Q9HBL6 345 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 LHX9Q9NQ69 397 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 PRDM7Q9NQW5 492 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 C1orf109Q9NX04 203 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 ADAM29Q9UKF5 820 aa12.91□□□□□ -0.34
VMP1-210ENST00000589823 ATP6AP2A0A1C7CYW4 349 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 MED19A0JLT2 244 aaPredicted RBP12.9□□□□□ -0.34
VMP1-210ENST00000589823 ZNF860A6NHJ4 632 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 VPS4BO75351 444 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 SEC22BO75396 215 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 ATP6AP2O75787 350 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 MYO1DO94832 1006 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 SCELO95171 688 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 KLK1P06870 262 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 LIPCP11150 499 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 CERS1P27544 350 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 BSGP35613 385 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 PCBP4P57723 403 aaKnown RBP12.9□□□□□ -0.34
VMP1-210ENST00000589823 SLC9A5Q14940 896 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 GALNTL6Q49A17 601 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 ATP6AP1LQ52LC2 224 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 ZNF385CQ66K41 422 aaPredicted RBP12.9□□□□□ -0.34
VMP1-210ENST00000589823 CYP20A1Q6UW02 462 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 Q6ZSR9 355 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 CACNA2D3Q8IZS8 1091 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 ZCCHC7Q8N3Z6 543 aaKnown RBP12.9□□□□□ -0.34
VMP1-210ENST00000589823 OR2T11Q8NH01 316 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 FGF11Q92914 225 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 APIPQ96GX9 242 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 METTL2AQ96IZ6 378 aaKnown RBP12.9□□□□□ -0.34
VMP1-210ENST00000589823 SORBS1Q9BX66 1292 aaKnown RBP12.9□□□□□ -0.34
VMP1-210ENST00000589823 CHST8Q9H2A9 424 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 CCDC86Q9H6F5 360 aaKnown RBP12.9□□□□□ -0.34
VMP1-210ENST00000589823 DDX31Q9H8H2 851 aaKnown RBP12.9□□□□□ -0.34
VMP1-210ENST00000589823 MEAF6Q9HAF1 191 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 HCN3Q9P1Z3 774 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 TRPC4Q9UBN4 977 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 MAP4K5Q9Y4K4 846 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 CCL27Q9Y4X3 112 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 USH1CQ9Y6N9 552 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 SPACA6W5XKT8 324 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 WDFY3Q8IZQ1 3526 aa12.9□□□□□ -0.34
VMP1-210ENST00000589823 SPTBP11277 2137 aa12.89□□□□□ -0.35
VMP1-210ENST00000589823 NPIPB8E9PQR5 432 aa12.89□□□□□ -0.35
VMP1-210ENST00000589823 PSMD12O00232 456 aaPredicted RBP12.89□□□□□ -0.35
VMP1-210ENST00000589823 LSM1O15116 133 aaKnown RBP12.89□□□□□ -0.35
VMP1-210ENST00000589823 CHST10O43529 356 aa12.89□□□□□ -0.35
VMP1-210ENST00000589823 PCDH7O60245 1069 aa12.89□□□□□ -0.35
VMP1-210ENST00000589823 PEX11AO75192 247 aa12.89□□□□□ -0.35
VMP1-210ENST00000589823 EEDO75530 441 aaKnown RBP12.89□□□□□ -0.35
VMP1-210ENST00000589823 ONECUT2O95948 504 aa12.89□□□□□ -0.35
VMP1-210ENST00000589823 JUNP05412 331 aaKnown RBP12.89□□□□□ -0.35
VMP1-210ENST00000589823 CD63P08962 238 aa12.89□□□□□ -0.35
VMP1-210ENST00000589823 TROVE2P10155 538 aaKnown RBP eCLIP12.89□□□□□ -0.35
VMP1-210ENST00000589823 RNH1P13489 461 aaKnown RBP12.89□□□□□ -0.35
VMP1-210ENST00000589823 TCN2P20062 427 aa12.89□□□□□ -0.35
VMP1-210ENST00000589823 ITGAXP20702 1163 aa12.89□□□□□ -0.35
VMP1-210ENST00000589823 PRPH2P23942 346 aa12.89□□□□□ -0.35
VMP1-210ENST00000589823 OLR1P78380 273 aa12.89□□□□□ -0.35
VMP1-210ENST00000589823 MAT1AQ00266 395 aaKnown RBP12.89□□□□□ -0.35
VMP1-210ENST00000589823 OCA2Q04671 838 aa12.89□□□□□ -0.35
VMP1-210ENST00000589823 SLAMF1Q13291 335 aa12.89□□□□□ -0.35
VMP1-210ENST00000589823 RUNX2Q13950 521 aa12.89□□□□□ -0.35
VMP1-210ENST00000589823 CCNYL2Q5T2Q4 361 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms