RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 DEPPQ9NTK1 212 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 DBF4Q9UBU7 674 aaPredicted RBP2.14□□□□□ -2.07
VPS35-207ENST00000568191 IKZF3Q9UKT9 509 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 NEDD4P46934 1319 aa2.14□□□□□ -2.07
VPS35-207ENST00000568191 GON4LQ3T8J9 2241 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 FAM168BA1KXE4 195 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 FYNP06241 537 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 ERCC2P18074 760 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 HSPA4P34932 840 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 KRT20P35900 424 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 RGRP47804 291 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 GSK3BP49841 420 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 BTG1P62324 171 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 NDPQ00604 133 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 AIMP1Q12904 312 aaKnown RBP2.13□□□□□ -2.07
VPS35-207ENST00000568191 EIF4EBP2Q13542 120 aaPredicted RBP2.13□□□□□ -2.07
VPS35-207ENST00000568191 FASTKQ14296 549 aaKnown RBP2.13□□□□□ -2.07
VPS35-207ENST00000568191 KNOP1Q1ED39 458 aaKnown RBP2.13□□□□□ -2.07
VPS35-207ENST00000568191 TIMM50Q3ZCQ8 353 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 VWA2Q5GFL6 755 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 LRRC73Q5JTD7 316 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 KRBOX4Q5JUW0 171 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 DDX59Q5T1V6 619 aaKnown RBP eCLIP2.13□□□□□ -2.07
VPS35-207ENST00000568191 UTF1Q5T230 341 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 LIPJQ5W064 366 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 CLEC4GQ6UXB4 293 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 Q6ZVH6 145 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 Q6ZVQ6 151 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 TRMT11Q7Z4G4 463 aaKnown RBP2.13□□□□□ -2.07
VPS35-207ENST00000568191 OR1B1Q8NGR6 318 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 ITLN1Q8WWA0 313 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 EXT2Q93063 718 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 RBM18Q96H35 190 aaKnown RBP2.13□□□□□ -2.07
VPS35-207ENST00000568191 RBM41Q96IZ5 413 aaKnown RBP2.13□□□□□ -2.07
VPS35-207ENST00000568191 RMDN2Q96LZ7 410 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 KATNB1Q9BVA0 655 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 UBE2TQ9NPD8 197 aaPredicted RBP2.13□□□□□ -2.07
VPS35-207ENST00000568191 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP2.13□□□□□ -2.07
VPS35-207ENST00000568191 PDRG1Q9NUG6 133 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 CHCHD3Q9NX63 227 aaKnown RBP2.13□□□□□ -2.07
VPS35-207ENST00000568191 SATB2Q9UPW6 733 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 RUVBL2Q9Y230 463 aaKnown RBP2.13□□□□□ -2.07
VPS35-207ENST00000568191 NCKAP1Q9Y2A7 1128 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 CPQQ9Y646 472 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 SPATA31D1Q6ZQQ2 1576 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 UMODL1Q5DID0 1318 aa2.13□□□□□ -2.07
VPS35-207ENST00000568191 IGLON5A6NGN9 336 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 TMCO5BA8MYB1 307 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 E5RGE8 158 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 NPIPA3F8WFD2 350 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 SIGLEC5O15389 551 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 KIF5CO60282 957 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 PRDM1O75626 825 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 MT-ND2P03891 347 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 UMPSP11172 480 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 CD59P13987 128 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 SLC1A3P43003 542 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 NAAAQ02083 359 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 RASA2Q15283 850 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 KYNUQ16719 465 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 POM121L1PQ3SYA9 428 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 NHLRC3Q5JS37 347 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 MFSD4BQ5TF39 518 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 PPP1R21Q6ZMI0 780 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 C11orf57Q6ZUT1 292 aaPredicted RBP2.12□□□□□ -2.07
VPS35-207ENST00000568191 RFPL4BQ6ZWI9 263 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 BRINP3Q76B58 766 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 NRARPQ7Z6K4 114 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 TBC1D10CQ8IV04 446 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 CROCCP3Q8IVE0 287 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 DND1Q8IYX4 353 aaKnown RBP2.12□□□□□ -2.07
VPS35-207ENST00000568191 ELMOD1Q8N336 334 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 C11orf42Q8N5U0 333 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 LSMEM1Q8N8F7 131 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 PCNPQ8WW12 178 aaKnown RBP2.12□□□□□ -2.07
VPS35-207ENST00000568191 P2RX5Q93086 422 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 VPS33AQ96AX1 596 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 RUNDC3BQ96NL0 473 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 TNFRSF13CQ96RJ3 184 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 TEX13BQ9BXU2 312 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 TXLNGYQ9BZA5 131 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 DPEP2Q9H4A9 486 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 NMUR1Q9HB89 426 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 SH3GLB2Q9NR46 395 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 IARS2Q9NSE4 1012 aaKnown RBP2.12□□□□□ -2.07
VPS35-207ENST00000568191 TMOD3Q9NYL9 352 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 NSG2Q9Y328 171 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 SLC6A5Q9Y345 797 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 FER1L5A0AVI2 2057 aa2.12□□□□□ -2.07
VPS35-207ENST00000568191 C2orf92A0A1B0GVN3 265 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 H3BMM5 538 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 K7EQG2 157 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 SCO2O43819 266 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 PRAF2O60831 178 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 TBX10O75333 385 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 KBTBD11O94819 623 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 GGPS1O95749 300 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 LBPP18428 481 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 PPP2R1AP30153 589 aa2.11□□□□□ -2.07
VPS35-207ENST00000568191 SSTR1P30872 391 aa2.11□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms