RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 DNAJB8Q8NHS0 232 aa9.65□□□□□ -0.86
CLK3-205ENST00000561673 ELP5Q8TE02 316 aa9.65□□□□□ -0.86
CLK3-205ENST00000561673 KIAA1191Q96A73 305 aa9.65□□□□□ -0.86
CLK3-205ENST00000561673 MS4A6EQ96DS6 147 aa9.65□□□□□ -0.86
CLK3-205ENST00000561673 PHACTR1Q9C0D0 580 aa9.65□□□□□ -0.86
CLK3-205ENST00000561673 PITHD1Q9GZP4 211 aaPredicted RBP9.65□□□□□ -0.86
CLK3-205ENST00000561673 RAB17Q9H0T7 212 aa9.65□□□□□ -0.86
CLK3-205ENST00000561673 CDCP1Q9H5V8 836 aa9.65□□□□□ -0.86
CLK3-205ENST00000561673 NT5DC2Q9H857 520 aa9.65□□□□□ -0.86
CLK3-205ENST00000561673 CNOT10Q9H9A5 744 aaKnown RBP9.65□□□□□ -0.86
CLK3-205ENST00000561673 NECTIN3Q9NQS3 549 aa9.65□□□□□ -0.86
CLK3-205ENST00000561673 PRDM9Q9NQV7 894 aa9.65□□□□□ -0.86
CLK3-205ENST00000561673 DNAJC11Q9NVH1 559 aa9.65□□□□□ -0.86
CLK3-205ENST00000561673 WWOXQ9NZC7 414 aa9.65□□□□□ -0.86
CLK3-205ENST00000561673 GPRC5BQ9NZH0 403 aa9.65□□□□□ -0.86
CLK3-205ENST00000561673 ABI3Q9P2A4 366 aa9.65□□□□□ -0.86
CLK3-205ENST00000561673 COPG2Q9UBF2 871 aa9.65□□□□□ -0.86
CLK3-205ENST00000561673 PTBP2Q9UKA9 531 aaKnown RBP9.65□□□□□ -0.86
CLK3-205ENST00000561673 ZNF490Q9ULM2 529 aaPredicted RBP9.65□□□□□ -0.86
CLK3-205ENST00000561673 SPTBN1Q01082 2364 aaKnown RBP9.65□□□□□ -0.87
CLK3-205ENST00000561673 POLEQ07864 2286 aa9.65□□□□□ -0.87
CLK3-205ENST00000561673 DOPEY1Q5JWR5 2465 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 IGKV3D-11A0A0A0MRZ8 115 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 A0A0G2JN53 185 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 TCRBV16S1A1N1A0A5B0 115 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 CLGNO14967 610 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 ERI3O43414 337 aaKnown RBP9.64□□□□□ -0.87
CLK3-205ENST00000561673 STK16O75716 305 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 CRYABP02511 175 aaKnown RBP9.64□□□□□ -0.87
CLK3-205ENST00000561673 SLC35E2BP0CK96 405 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 EPORP19235 508 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 PMP22Q01453 160 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 SLC7A5Q01650 507 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 GUCY2DQ02846 1103 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 DLG1Q12959 904 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 RUNX2Q13950 521 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 OR1C1Q15619 314 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 CMC1Q7Z7K0 106 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 ISCA2Q86U28 154 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 RPS19BP1Q86WX3 136 aaKnown RBP9.64□□□□□ -0.87
CLK3-205ENST00000561673 SLC5A8Q8N695 610 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 SNX31Q8N9S9 440 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 PDPRQ8NCN5 879 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 MDS2Q8NDY4 140 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 NFAM1Q8NET5 270 aaPredicted RBP9.64□□□□□ -0.87
CLK3-205ENST00000561673 FBF1Q8TES7 1133 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 CCT6BQ92526 530 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 ZDHHC16Q969W1 377 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 GAL3ST3Q96A11 431 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 SEC16BQ96JE7 1060 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 FAR2Q96K12 515 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 UTP23Q9BRU9 249 aaKnown RBP9.64□□□□□ -0.87
CLK3-205ENST00000561673 HES7Q9BYE0 225 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 EHD1Q9H4M9 534 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 ALG9Q9H6U8 611 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 CD274Q9NZQ7 290 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 RNF112Q9ULX5 631 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 ASB1Q9Y576 335 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 PCDHGB6Q9Y5F9 930 aa9.64□□□□□ -0.87
CLK3-205ENST00000561673 ESYT3A0FGR9 886 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 ANKDD1BA6NHY2 528 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 SAGE2PA6NJ88 616 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 GABRR3A8MPY1 467 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 A8MUA0 341 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 CCNT2O60583 730 aaKnown RBP9.63□□□□□ -0.87
CLK3-205ENST00000561673 CLEC3AO75596 197 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 NEURL1O76050 574 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 UNC5CO95185 931 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 NUDT7P0C024 238 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 CD22P20273 847 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 GSTM2P28161 218 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 CRABP2P29373 138 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 STX2P32856 288 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 PLA2G16P53816 162 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 TAS2R50P59544 299 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 DOC2AQ14183 400 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 EFTUD2Q15029 972 aaKnown RBP eCLIP9.63□□□□□ -0.87
CLK3-205ENST00000561673 PDK4Q16654 411 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 ADPRMQ3LIE5 342 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 XKR6Q5GH73 641 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 ZNF468Q5VIY5 522 aaPredicted RBP9.63□□□□□ -0.87
CLK3-205ENST00000561673 C1QL3Q5VWW1 255 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 ZNF787Q6DD87 383 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 ADNP2Q6IQ32 1131 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 GFRALQ6UXV0 394 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 RAPH1Q70E73 1250 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 FJX1Q86VR8 437 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 TMEM52Q8NDY8 209 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 ARMC2Q8NEN0 867 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 STAG3L4Q8TBR4 150 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 EXT2Q93063 718 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 WDR34Q96EX3 536 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 PTCD3Q96EY7 689 aaKnown RBP9.63□□□□□ -0.87
CLK3-205ENST00000561673 SCMH1Q96GD3 660 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 QRFPRQ96P65 431 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 NPLQ9BXD5 320 aaPredicted RBP9.63□□□□□ -0.87
CLK3-205ENST00000561673 CD244Q9BZW8 370 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 REXO4Q9GZR2 422 aaKnown RBP9.63□□□□□ -0.87
CLK3-205ENST00000561673 KLHL1Q9NR64 748 aa9.63□□□□□ -0.87
CLK3-205ENST00000561673 IGSF5Q9NSI5 407 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms