RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 TPP2P29144 1249 aaPredicted RBP9.57□□□□□ -0.88
LDLR-214ENST00000560628 EEF1DP29692 281 aaKnown RBP9.57□□□□□ -0.88
LDLR-214ENST00000560628 CASQ1P31415 396 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 KCNC1P48547 511 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 PLA2G16P53816 162 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 PLTPP55058 493 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 GPX6P59796 221 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 ALDH6A1Q02252 535 aaKnown RBP9.57□□□□□ -0.88
LDLR-214ENST00000560628 TRADDQ15628 312 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 ADNP2Q6IQ32 1131 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 SLC25A25Q6KCM7 469 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 CCDC25Q86WR0 208 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 CTAGE3PQ8IX95 158 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 KLHDC8AQ8IYD2 350 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 KRT78Q8N1N4 520 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 ARMC2Q8NEN0 867 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 NFAM1Q8NET5 270 aaPredicted RBP9.57□□□□□ -0.88
LDLR-214ENST00000560628 THAP3Q8WTV1 239 aaPredicted RBP9.57□□□□□ -0.88
LDLR-214ENST00000560628 EXT2Q93063 718 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 MS4A6EQ96DS6 147 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 SCMH1Q96GD3 660 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 CPNE1Q99829 537 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 TMEM79Q9BSE2 394 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 DEFB126Q9BYW3 111 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 PRM3Q9NNZ6 103 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 PNO1Q9NRX1 252 aaKnown RBP9.57□□□□□ -0.88
LDLR-214ENST00000560628 DNAJC11Q9NVH1 559 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 CD274Q9NZQ7 290 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 ZNF490Q9ULM2 529 aaPredicted RBP9.57□□□□□ -0.88
LDLR-214ENST00000560628 DOPEY1Q5JWR5 2465 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 CPAMD8Q8IZJ3 1885 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 ANKDD1BA6NHY2 528 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 SAGE2PA6NJ88 616 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 FAM159BA6NKW6 160 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 PRSS44E7EML9 344 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 EIF3HO15372 352 aaKnown RBP eCLIP9.56□□□□□ -0.88
LDLR-214ENST00000560628 B3GALT2O43825 422 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 CCNT2O60583 730 aaKnown RBP9.56□□□□□ -0.88
LDLR-214ENST00000560628 STK16O75716 305 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 MYO1DO94832 1006 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 TBX6O95947 436 aaPredicted RBP9.56□□□□□ -0.88
LDLR-214ENST00000560628 STMN1P16949 149 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 PPP2R1BP30154 601 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 GGT5P36269 586 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 GP5P40197 560 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 CA7P43166 264 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 HNRNPFP52597 415 aaKnown RBP9.56□□□□□ -0.88
LDLR-214ENST00000560628 MLF1P58340 268 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 RBPJQ06330 500 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 DOC2AQ14183 400 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 C3AR1Q16581 482 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 XKR6Q5GH73 641 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 SULT1C3Q6IMI6 304 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 VN1R5Q7Z5H4 357 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 SRRM1Q8IYB3 904 aaKnown RBP9.56□□□□□ -0.88
LDLR-214ENST00000560628 TCAIMQ8N3R3 496 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 HORMAD2Q8N7B1 307 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 PPM1NQ8N819 430 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 FAM47BQ8NA70 645 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 TMEM178AQ8NBL3 297 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 TMEM52Q8NDY8 209 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 TTLQ8NG68 377 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 ITLN2Q8WWU7 325 aaPredicted RBP9.56□□□□□ -0.88
LDLR-214ENST00000560628 SREK1Q8WXA9 508 aaKnown RBP9.56□□□□□ -0.88
LDLR-214ENST00000560628 GAL3ST3Q96A11 431 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 CCDC120Q96HB5 630 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 QRFPRQ96P65 431 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 F2RL3Q96RI0 385 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 GPR22Q99680 433 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 RBBP8Q99708 897 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 CAPS2Q9BXY5 557 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 REXO4Q9GZR2 422 aaKnown RBP9.56□□□□□ -0.88
LDLR-214ENST00000560628 NT5DC2Q9H857 520 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 CNOT10Q9H9A5 744 aaKnown RBP9.56□□□□□ -0.88
LDLR-214ENST00000560628 PRTFDC1Q9NRG1 225 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 GPRC5BQ9NZH0 403 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 SUCOQ9UBS9 1254 aaKnown RBP9.56□□□□□ -0.88
LDLR-214ENST00000560628 PTBP2Q9UKA9 531 aaKnown RBP9.56□□□□□ -0.88
LDLR-214ENST00000560628 RNF112Q9ULX5 631 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 PCDHGB6Q9Y5F9 930 aa9.56□□□□□ -0.88
LDLR-214ENST00000560628 NBPF19A0A087WUL8 3843 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 TRBV11-1A0A0K0K1C0 115 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 ASPDHA6ND91 283 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 TGFBR3LH3BV60 316 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 CLDN4O14493 209 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 SLC19A2O60779 497 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 SH3BGRLO75368 114 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 CLEC3AO75596 197 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 SLC25A12O75746 678 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 C1QAP02745 245 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 S100BP04271 92 aaPredicted RBP9.55□□□□□ -0.88
LDLR-214ENST00000560628 CD22P20273 847 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 CERS1P27544 350 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 GRNP28799 593 aaKnown RBP9.55□□□□□ -0.88
LDLR-214ENST00000560628 SPRP35270 261 aaPredicted RBP9.55□□□□□ -0.88
LDLR-214ENST00000560628 MAGEA4P43358 317 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 CYB561P49447 251 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 HLCSP50747 726 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 CASP6P55212 293 aa9.55□□□□□ -0.88
LDLR-214ENST00000560628 RAB38P57729 211 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms