RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 B3GALT4O96024 378 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 TUBB4AP04350 444 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 CD1EP15812 388 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 ZNF10P21506 573 aaPredicted RBP8.56□□□□□ -1.04
HDDC3-204ENST00000559834 GABRB3P28472 473 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 HPDP32754 393 aaPredicted RBP8.56□□□□□ -1.04
HDDC3-204ENST00000559834 SSR4P51571 173 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 HSD17B7P56937 341 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 BTN3A2P78410 334 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 PPP1R7Q15435 360 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 RBM20Q5T481 1227 aaKnown RBP8.56□□□□□ -1.04
HDDC3-204ENST00000559834 HECTD2Q5U5R9 776 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 CES4AQ5XG92 561 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 NXPE4Q6UWF7 544 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 RGS9BPQ6ZS82 235 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 ACAD11Q709F0 780 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 FGD2Q7Z6J4 655 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 CD163Q86VB7 1156 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 THOC6Q86W42 341 aaKnown RBP8.56□□□□□ -1.04
HDDC3-204ENST00000559834 ZNF227Q86WZ6 799 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 CNTN4Q8IWV2 1026 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 GPALPP1Q8IXQ4 340 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 AGGF1Q8N302 714 aaeCLIP8.56□□□□□ -1.04
HDDC3-204ENST00000559834 TTLQ8NG68 377 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 ANKRD7Q92527 254 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 VMP1Q96GC9 406 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 PDLIM5Q96HC4 596 aaKnown RBP8.56□□□□□ -1.04
HDDC3-204ENST00000559834 TREX2Q9BQ50 279 aaPredicted RBP8.56□□□□□ -1.04
HDDC3-204ENST00000559834 NPLQ9BXD5 320 aaPredicted RBP8.56□□□□□ -1.04
HDDC3-204ENST00000559834 NECTIN3Q9NQS3 549 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 PNO1Q9NRX1 252 aaKnown RBP8.56□□□□□ -1.04
HDDC3-204ENST00000559834 PPIEQ9UNP9 301 aaKnown RBP8.56□□□□□ -1.04
HDDC3-204ENST00000559834 ERVK-11Q9UQG0 969 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 MRPS33Q9Y291 106 aaKnown RBP8.56□□□□□ -1.04
HDDC3-204ENST00000559834 LRBAP50851 2863 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 APCP25054 2843 aa8.56□□□□□ -1.04
HDDC3-204ENST00000559834 A8MVJ9 347 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 ACOT7O00154 380 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 PGRMC1O00264 195 aaKnown RBP8.55□□□□□ -1.04
HDDC3-204ENST00000559834 GNAZP19086 355 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 SAT1P21673 171 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 GSTM2P28161 218 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 RFC3P40938 356 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 FNTAP49354 379 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 HNMTP50135 292 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 REEP5Q00765 189 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 PLGLB1Q02325 96 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 RCN2Q14257 317 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 CMPK2Q5EBM0 449 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 TOR1AIP1Q5JTV8 583 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 TEDDM1Q5T9Z0 273 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 RNASEH2BQ5TBB1 312 aaKnown RBP8.55□□□□□ -1.04
HDDC3-204ENST00000559834 FAM45BPQ6NSW5 357 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 TMPRSS11BQ86T26 416 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 KRT78Q8N1N4 520 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 CA13Q8N1Q1 262 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 TMEM132CQ8N3T6 1108 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 ANKRD53Q8N9V6 530 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 APCDD1LQ8NCL9 501 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 OR52N2Q8NGI0 321 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 FAM45AQ8TCE6 357 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 ASB15Q8WXK1 588 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 CERS2Q96G23 380 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 MS4A14Q96JA4 679 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 SEC16BQ96JE7 1060 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 PDLIM2Q96JY6 352 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 TSNARE1Q96NA8 513 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 ZNF559Q9BR84 538 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 CAPS2Q9BXY5 557 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 DEFB127Q9H1M4 99 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 KLHL31Q9H511 634 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 PRTFDC1Q9NRG1 225 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 HPF1Q9NWY4 346 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 KCMF1Q9P0J7 381 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 SLC22A14Q9Y267 594 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 CCDC168Q8NDH2 2452 aa8.55□□□□□ -1.04
HDDC3-204ENST00000559834 MED13LQ71F56 2210 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 BCKDKO14874 412 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 B3GALT2O43825 422 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 C1GALT1C1LP0DN25 315 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 IGFBP2P18065 325 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 GPR85P60893 370 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 PPIAP62937 165 aaKnown RBP8.54□□□□□ -1.04
HDDC3-204ENST00000559834 CDKL1Q00532 357 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 PMPCAQ10713 525 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 HYAL2Q12891 473 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 SLC13A2Q13183 592 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 BMPR2Q13873 1038 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 RUNX2Q13950 521 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 EFTUD2Q15029 972 aaKnown RBP eCLIP8.54□□□□□ -1.04
HDDC3-204ENST00000559834 GXYLT1Q4G148 440 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 MDGA2Q7Z553 956 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 SLC22A16Q86VW1 577 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 LRRC8AQ8IWT6 810 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 SCUBE1Q8IWY4 988 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 ZNF595Q8IYB9 648 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 CLYBLQ8N0X4 340 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 PDIK1LQ8N165 341 aa8.54□□□□□ -1.04
HDDC3-204ENST00000559834 NKAPQ8N5F7 415 aaKnown RBP8.54□□□□□ -1.04
HDDC3-204ENST00000559834 PSD4Q8NDX1 1056 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms