RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 NINJ2Q9NZG7 142 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 CTSFQ9UBX1 484 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 FETUBQ9UGM5 382 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 DMGDHQ9UI17 866 aaKnown RBP8.21□□□□□ -1.09
USP3-208ENST00000558285 MKL2Q9ULH7 1088 aa8.21□□□□□ -1.09
USP3-208ENST00000558285 FEZF1A0PJY2 475 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 A6NL46 340 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 TTLL8A6PVC2 850 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 K7EPI3 171 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 B3GALT2O43825 422 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 UGDHO60701 494 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 ALOX12BO75342 701 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 KLHL18O94889 574 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 KLHL2O95198 593 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 RNH1P13489 461 aaKnown RBP8.2□□□□□ -1.1
USP3-208ENST00000558285 PLA2G2AP14555 144 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 ARL1P40616 181 aaPredicted RBP8.2□□□□□ -1.1
USP3-208ENST00000558285 HNF4AP41235 474 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 XCR1P46094 333 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 SLC6A12P48065 614 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 CSRP3P50461 194 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 ALDH18A1P54886 795 aaKnown RBP8.2□□□□□ -1.1
USP3-208ENST00000558285 NAA20P61599 178 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 TMEM35AQ53FP2 167 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 CRB2Q5IJ48 1285 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 CHSY3Q70JA7 882 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 PIGWQ7Z7B1 504 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 PLD3Q8IV08 490 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 OR9A4Q8NGU2 314 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 ZCCHC10Q8TBK6 192 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 SLC44A1Q8WWI5 657 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 GAL3ST3Q96A11 431 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 PNPLA2Q96AD5 504 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 TBC1D20Q96BZ9 403 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 TM4SF19Q96DZ7 209 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 SCYL1Q96KG9 808 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 LMF1Q96S06 567 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 PAFAH2Q99487 392 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 SMAD5Q99717 465 aaKnown RBP8.2□□□□□ -1.1
USP3-208ENST00000558285 CD244Q9BZW8 370 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 ILKAPQ9H0C8 392 aaPredicted RBP8.2□□□□□ -1.1
USP3-208ENST00000558285 VPS11Q9H270 941 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 SMYD2Q9NRG4 433 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 STK38LQ9Y2H1 464 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 NAALAD2Q9Y3Q0 740 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 SPTA1P02549 2419 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 POC1B-GALNT4F8VUJ3 575 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 DYRK3O43781 588 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 VPS4BO75351 444 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 ATP5HO75947 161 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 C1QL1O75973 258 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 MLYCDO95822 493 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 SERPINA7P05543 415 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 C2P06681 752 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 UMODP07911 640 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 FURINP09958 794 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 SLC35E2BP0CK96 405 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 NFKB2Q00653 900 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 SLBPQ14493 270 aaKnown RBP eCLIP8.2□□□□□ -1.1
USP3-208ENST00000558285 CPZQ66K79 652 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 MED27Q6P2C8 311 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 TMEM207Q6UWW9 146 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 IGFL3Q6UXB1 125 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 ISLR2Q6UXK2 745 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 COX15Q7KZN9 410 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 TRPM8Q7Z2W7 1104 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 VN1R4Q7Z5H5 301 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 PTRH1Q86Y79 214 aaKnown RBP8.2□□□□□ -1.1
USP3-208ENST00000558285 TRIM42Q8IWZ5 723 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 PRSS58Q8IYP2 241 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 HORMAD2Q8N7B1 307 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 FDCSPQ8NFU4 85 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 OR11G2Q8NGC1 345 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 UBTD2Q8WUN7 234 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 ANKRD49Q8WVL7 239 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 ATP6V1E2Q96A05 226 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 LPAR4Q99677 370 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 MMADHCQ9H3L0 296 aaPredicted RBP8.2□□□□□ -1.1
USP3-208ENST00000558285 ACTR8Q9H981 624 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 MLXIPLQ9NP71 852 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 AGPAT4Q9NRZ5 378 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 NMRK1Q9NWW6 199 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 PTBP2Q9UKA9 531 aaKnown RBP8.2□□□□□ -1.1
USP3-208ENST00000558285 NFU1Q9UMS0 254 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 VPS4AQ9UN37 437 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 PCDHGA11Q9Y5H2 935 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 HS3ST3B1Q9Y662 390 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 DMXL2Q8TDJ6 3036 aa8.2□□□□□ -1.1
USP3-208ENST00000558285 DSPP15924 2871 aaKnown RBP8.19□□□□□ -1.1
USP3-208ENST00000558285 COL6A6A6NMZ7 2263 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 A0A1W2PQ72 361 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 DPPA5A6NC42 116 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 GALR3O60755 368 aaPredicted RBP8.19□□□□□ -1.1
USP3-208ENST00000558285 DNAJB5O75953 348 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 WISP1O95388 367 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 BMP10O95393 424 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 FHP07954 510 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 IL1RNP18510 177 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 TSFMP43897 325 aaKnown RBP8.19□□□□□ -1.1
USP3-208ENST00000558285 KCNC1P48547 511 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms