RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 CDK6Q00534 326 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 SSX1Q16384 188 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 FRMPD2BQ6IN97 320 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 UNC5DQ6UXZ4 953 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 SAPCD2Q86UD0 394 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 IFNL1Q8IU54 200 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 ASCC1Q8N9N2 400 aaKnown RBP15.6■□□□□ 0.09
SHMT2-231ENST00000557433 FAM181AQ8N9Y4 354 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 OR9Q1Q8NGQ5 310 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 WFDC5Q8TCV5 224 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 TIFAQ96CG3 184 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 MTERF3Q96E29 417 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 OR5M11Q96RB7 305 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 FAM83CQ9BQN1 747 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 SLC35A5Q9BS91 424 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 TMEM245Q9H330 911 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 SUV39H2Q9H5I1 410 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 SLC25A19Q9HC21 320 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 C1GALT1Q9NS00 363 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 SH3BP4Q9P0V3 963 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 LRFN2Q9ULH4 789 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 PLXNB3Q9ULL4 1909 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 E7EQ34 232 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 CACNB4O00305 520 aaPredicted RBP15.6■□□□□ 0.09
SHMT2-231ENST00000557433 ZNF197O14709 1029 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 GREM1O60565 184 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 ZNF821O75541 412 aaPredicted RBP15.6■□□□□ 0.09
SHMT2-231ENST00000557433 GPX5O75715 221 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 DNTTP04053 509 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 ITGB7P26010 798 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 PCBP3P57721 371 aaKnown RBP15.6■□□□□ 0.09
SHMT2-231ENST00000557433 CYP4F2P78329 520 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 ZNF763Q0D2J5 394 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 PLD1Q13393 1074 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 DDX39BQ13838 428 aaKnown RBP15.6■□□□□ 0.09
SHMT2-231ENST00000557433 PDE7AQ13946 482 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 CDK10Q15131 360 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 C6orf183Q5T699 404 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 TAS1R1Q7RTX1 841 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 VN1R5Q7Z5H4 357 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 RNF180Q86T96 592 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 NPAS4Q8IUM7 802 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 CPXM2Q8N436 756 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 RNF175Q8N4F7 328 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 OR52J3Q8NH60 311 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 KLHL6Q8WZ60 621 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 ELMO1Q92556 727 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 OPALINQ96PE5 141 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 BBS2Q9BXC9 721 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 MIR1-1HGQ9H1L0 117 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 DDX28Q9NUL7 540 aaKnown RBP15.6■□□□□ 0.09
SHMT2-231ENST00000557433 KCND3Q9UK17 655 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 LSM7Q9UK45 103 aaKnown RBP15.6■□□□□ 0.09
SHMT2-231ENST00000557433 STUB1Q9UNE7 303 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 LSM2Q9Y333 95 aaKnown RBP15.6■□□□□ 0.09
SHMT2-231ENST00000557433 DSPPQ9NZW4 1301 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 GNG14A0A1W2PPG7 69 aa15.59■□□□□ 0.09
SHMT2-231ENST00000557433 ANKRD34BA5PLL1 514 aa15.59■□□□□ 0.09
SHMT2-231ENST00000557433 ZNF670-ZNF695F2Z2N8 137 aa15.59■□□□□ 0.09
SHMT2-231ENST00000557433 GPR37L1O60883 481 aa15.59■□□□□ 0.09
SHMT2-231ENST00000557433 LGI1O95970 557 aa15.59■□□□□ 0.09
SHMT2-231ENST00000557433 CATP04040 527 aaKnown RBP15.59■□□□□ 0.09
SHMT2-231ENST00000557433 ARAFP10398 606 aa15.59■□□□□ 0.09
SHMT2-231ENST00000557433 ETFAP13804 333 aa15.59■□□□□ 0.09
SHMT2-231ENST00000557433 GKP32189 559 aa15.59■□□□□ 0.09
SHMT2-231ENST00000557433 MRPS15P82914 257 aaKnown RBP15.59■□□□□ 0.09
SHMT2-231ENST00000557433 SCN1BQ07699 218 aa15.59■□□□□ 0.09
SHMT2-231ENST00000557433 AGTRAPQ6RW13 159 aa15.59■□□□□ 0.09
SHMT2-231ENST00000557433 NRARPQ7Z6K4 114 aa15.59■□□□□ 0.09
SHMT2-231ENST00000557433 AQP11Q8NBQ7 271 aa15.59■□□□□ 0.09
SHMT2-231ENST00000557433 OR7G3Q8NG95 312 aa15.59■□□□□ 0.09
SHMT2-231ENST00000557433 OR9Q2Q8NGE9 314 aa15.59■□□□□ 0.09
SHMT2-231ENST00000557433 OR56A3Q8NH54 315 aa15.59■□□□□ 0.09
SHMT2-231ENST00000557433 NFKBIDQ8NI38 313 aa15.59■□□□□ 0.09
SHMT2-231ENST00000557433 ZNF461Q8TAF7 563 aa15.59■□□□□ 0.09
SHMT2-231ENST00000557433 TMEM80Q96HE8 168 aa15.59■□□□□ 0.09
SHMT2-231ENST00000557433 VPS35Q96QK1 796 aa15.59■□□□□ 0.09
SHMT2-231ENST00000557433 KCNS3Q9BQ31 491 aa15.59■□□□□ 0.09
SHMT2-231ENST00000557433 MND1Q9BWT6 205 aa15.59■□□□□ 0.09
SHMT2-231ENST00000557433 GPATCH2Q9NW75 528 aa15.59■□□□□ 0.09
SHMT2-231ENST00000557433 RPL36Q9Y3U8 105 aaKnown RBP15.59■□□□□ 0.09
SHMT2-231ENST00000557433 YIPF1Q9Y548 306 aa15.59■□□□□ 0.09
SHMT2-231ENST00000557433 FOXE1O00358 373 aaPredicted RBP15.58■□□□□ 0.09
SHMT2-231ENST00000557433 SGTAO43765 313 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 ABLIM3O94929 683 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 OPN1SWP03999 348 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 IFNW1P05000 195 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 C1SP09871 688 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 ZNF30P17039 623 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 ACLYP53396 1101 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 DCDC1P59894 354 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 HBA1P69905 142 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 ZXDBP98169 803 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 ASAH1Q13510 395 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 MPPE1Q53F39 396 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 DGKKQ5KSL6 1271 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 MED27Q6P2C8 311 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 ANGPTL8Q6UXH0 198 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 SPATC1Q76KD6 591 aa15.58■□□□□ 0.09
SHMT2-231ENST00000557433 NANOGNBQ7Z5D8 188 aa15.58■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms