RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 FAM117AQ9C073 453 aa10.37□□□□□ -0.75
SHMT2-218ENST00000555213 SPNS1Q9H2V7 528 aa10.37□□□□□ -0.75
SHMT2-218ENST00000555213 ELOVL6Q9H5J4 265 aa10.37□□□□□ -0.75
SHMT2-218ENST00000555213 GPN2Q9H9Y4 310 aaPredicted RBP10.37□□□□□ -0.75
SHMT2-218ENST00000555213 ANKHQ9HCJ1 492 aa10.37□□□□□ -0.75
SHMT2-218ENST00000555213 LHX9Q9NQ69 397 aa10.37□□□□□ -0.75
SHMT2-218ENST00000555213 TCF7L2Q9NQB0 619 aa10.37□□□□□ -0.75
SHMT2-218ENST00000555213 ARL8BQ9NVJ2 186 aa10.37□□□□□ -0.75
SHMT2-218ENST00000555213 ARMCX1Q9P291 453 aa10.37□□□□□ -0.75
SHMT2-218ENST00000555213 DHCR7Q9UBM7 475 aaKnown RBP10.37□□□□□ -0.75
SHMT2-218ENST00000555213 GPN3Q9UHW5 284 aaPredicted RBP10.37□□□□□ -0.75
SHMT2-218ENST00000555213 PADI2Q9Y2J8 665 aa10.37□□□□□ -0.75
SHMT2-218ENST00000555213 RAXQ9Y2V3 346 aa10.37□□□□□ -0.75
SHMT2-218ENST00000555213 MAP1BP46821 2468 aaKnown RBP10.36□□□□□ -0.75
SHMT2-218ENST00000555213 CHD8Q9HCK8 2581 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 USP24Q9UPU5 2620 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 E9PBE3 544 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 H0YIV9 168 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 KLK10O43240 276 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 LCMT2O60294 686 aaKnown RBP10.36□□□□□ -0.75
SHMT2-218ENST00000555213 KLHL41O60662 606 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 KRT6AP02538 564 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 STATHP02808 62 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 KRT6BP04259 564 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 CTSBP07858 339 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 CD63P08962 238 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 ALDOCP09972 364 aaKnown RBP10.36□□□□□ -0.75
SHMT2-218ENST00000555213 PIK3CBP42338 1070 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 KRT6CP48668 564 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 NEK2P51955 445 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 UCNP55089 124 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 CLN3Q13286 438 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 DDX39BQ13838 428 aaKnown RBP10.36□□□□□ -0.75
SHMT2-218ENST00000555213 FAM53BQ14153 422 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 UBAP2LQ14157 1087 aaKnown RBP10.36□□□□□ -0.75
SHMT2-218ENST00000555213 KRT72Q14CN4 511 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 CPSF6Q16630 551 aaKnown RBP eCLIP10.36□□□□□ -0.75
SHMT2-218ENST00000555213 NKAIN1Q4KMZ8 207 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 ARHGAP40Q5TG30 622 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 TMEM214Q6NUQ4 689 aaKnown RBP10.36□□□□□ -0.75
SHMT2-218ENST00000555213 HOMEZQ8IX15 550 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 LAS2Q8IYD9 372 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 KIRREL3Q8IZU9 778 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 ANKRD53Q8N9V6 530 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 KDF1Q8NAX2 398 aaPredicted RBP10.36□□□□□ -0.75
SHMT2-218ENST00000555213 OR7G3Q8NG95 312 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 CEP70Q8NHQ1 597 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 WDR20Q8TBZ3 569 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 NKD1Q969G9 470 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 GAL3ST3Q96A11 431 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 FKBP10Q96AY3 582 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 ERP27Q96DN0 273 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 TM4SF19Q96DZ7 209 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 C19orf60Q96EN9 201 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 RNF31Q96EP0 1072 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 C10orf90Q96M02 699 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 GBP5Q96PP8 586 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 SLC29A3Q9BZD2 475 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 SPRY4Q9C004 299 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 RHBGQ9H310 441 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 IFT80Q9P2H3 777 aaPredicted RBP10.36□□□□□ -0.75
SHMT2-218ENST00000555213 KCND3Q9UK17 655 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 SNX6Q9UNH7 406 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 TSC22D4Q9Y3Q8 395 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 SLC22A7Q9Y694 548 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 APC2O95996 2303 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 AHCTF1Q8WYP5 2266 aa10.36□□□□□ -0.75
SHMT2-218ENST00000555213 CACNA1GO43497 2377 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 TEX51A0A1B0GUA7 166 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 FFAR3O14843 346 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 GPR42O15529 346 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 CCDC22O60826 627 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 PDYNP01213 254 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 ALOX12P18054 663 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 FBLP22087 321 aaKnown RBP10.35□□□□□ -0.75
SHMT2-218ENST00000555213 HMOX2P30519 316 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 DLSTP36957 453 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 EIF2S3P41091 472 aaKnown RBP10.35□□□□□ -0.75
SHMT2-218ENST00000555213 GCGRP47871 477 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 RAP1GDS1P52306 607 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 RPS15P62841 145 aaKnown RBP10.35□□□□□ -0.75
SHMT2-218ENST00000555213 DMTNQ08495 405 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 KLF10Q13118 480 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 DNASE1L3Q13609 305 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 DSG2Q14126 1118 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 KIAA0040Q15053 153 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 ZRSR2Q15696 482 aaKnown RBP10.35□□□□□ -0.75
SHMT2-218ENST00000555213 TMEM35AQ53FP2 167 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 TOR1AIP1Q5JTV8 583 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 FRG2Q64ET8 278 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 TRIM40Q6P9F5 258 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 TIPARPQ7Z3E1 657 aaKnown RBP10.35□□□□□ -0.75
SHMT2-218ENST00000555213 SPACA3Q8IXA5 215 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 RNF175Q8N4F7 328 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 METTL27Q8N6F8 245 aaPredicted RBP10.35□□□□□ -0.75
SHMT2-218ENST00000555213 ZSCAN1Q8NBB4 408 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 SLC38A9Q8NBW4 561 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 KCT2Q8NC54 265 aa10.35□□□□□ -0.75
SHMT2-218ENST00000555213 SRFBP1Q8NEF9 429 aaKnown RBP10.35□□□□□ -0.75
SHMT2-218ENST00000555213 CREB3L4Q8TEY5 395 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms