RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 ZKSCAN7Q9P0L1 754 aaPredicted RBP4.48□□□□□ -1.69
SCFD1-209ENST00000553280 FAM153AQ9UHL3 310 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 TEKT2Q9UIF3 430 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 PILRAQ9UKJ1 303 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 SATB2Q9UPW6 733 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 AURKCQ9UQB9 309 aa4.48□□□□□ -1.69
SCFD1-209ENST00000553280 A0A1B0GUV1 79 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 ATP6AP2A0A1C7CYW4 349 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 MSGN1A6NI15 193 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 CIDEAO60543 219 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 CYTIPO60759 359 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 SAP30O75446 220 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 CRYAAP02489 173 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 SFTPBP07988 381 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 GSTA2P09210 222 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 HOXB6P17509 224 aaKnown RBP4.47□□□□□ -1.69
SCFD1-209ENST00000553280 FCARP24071 287 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 GJB2P29033 226 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 OR1D2P34982 312 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 SLC1A3P43003 542 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 PITPNBP48739 271 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 CCR4P51679 360 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 SSTP61278 116 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 SP3Q02447 781 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 KRT31Q15323 416 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 TAF7Q15545 349 aaPredicted RBP4.47□□□□□ -1.69
SCFD1-209ENST00000553280 ZNF74Q16587 644 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 DUSP5Q16690 384 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 KIAA1644Q3SXP7 199 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 HSP90AA5PQ58FG0 334 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 PLPP4Q5VZY2 271 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 SNRNP48Q6IEG0 339 aaKnown RBP4.47□□□□□ -1.69
SCFD1-209ENST00000553280 TCEAL6Q6IPX3 200 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 GALNT17Q6IS24 598 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 ABRAXAS1Q6UWZ7 409 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 GDPD4Q6W3E5 623 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 LEKR1Q6ZMV7 388 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 C17orf107Q6ZR85 190 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 TRMT11Q7Z4G4 463 aaKnown RBP4.47□□□□□ -1.69
SCFD1-209ENST00000553280 SYVN1Q86TM6 617 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 HSCBQ8IWL3 235 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 SAMD14Q8IZD0 417 aaPredicted RBP4.47□□□□□ -1.69
SCFD1-209ENST00000553280 TEX26Q8N6G2 289 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 STPG4Q8N801 248 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 LEMD2Q8NC56 503 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 CCDC110Q8TBZ0 833 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 GANCQ8TET4 914 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 TM9SF4Q92544 642 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 DYRK2Q92630 601 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 SENP5Q96HI0 755 aaPredicted RBP4.47□□□□□ -1.69
SCFD1-209ENST00000553280 MARK4Q96L34 752 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 GPR137Q96N19 417 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 NEDD4LQ96PU5 975 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 UBAC1Q9BSL1 405 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 RAB17Q9H0T7 212 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 MTIF3Q9H2K0 278 aaKnown RBP4.47□□□□□ -1.69
SCFD1-209ENST00000553280 ATP13A3Q9H7F0 1226 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 DCLRE1BQ9H816 532 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 NGBQ9NPG2 151 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 HOMER3Q9NSC5 361 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 SOHLH2Q9NX45 425 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 CNOT2Q9NZN8 540 aaKnown RBP4.47□□□□□ -1.69
SCFD1-209ENST00000553280 HACD3Q9P035 362 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 POLKQ9UBT6 870 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 ETV7Q9Y603 341 aa4.47□□□□□ -1.69
SCFD1-209ENST00000553280 UMODL1Q5DID0 1318 aa4.46□□□□□ -1.69
SCFD1-209ENST00000553280 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 A0A087WUV0 522 aaPredicted RBP4.46□□□□□ -1.7
SCFD1-209ENST00000553280 TRBV4-1A0A0J9YWV2 114 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 NOL3O60936 208 aaKnown RBP4.46□□□□□ -1.7
SCFD1-209ENST00000553280 OR6A2O95222 327 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 SERPINF2P08697 491 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 F7P08709 466 aaPredicted RBP4.46□□□□□ -1.7
SCFD1-209ENST00000553280 CT45A8P0DMV1 189 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 CT45A9P0DMV2 189 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 SLC2A2P11168 524 aaPredicted RBP4.46□□□□□ -1.7
SCFD1-209ENST00000553280 TNFRSF4P43489 277 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 KCNK10P57789 538 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 DCDC1P59894 354 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 KCNJ10P78508 379 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 KLHL30Q0D2K2 578 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 ARL16Q0P5N6 197 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 LRRC37A5PQ49AS3 106 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 CT45A2Q5DJT8 189 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 C9orf50Q5SZB4 431 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 RAET1GQ6H3X3 334 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 SLC25A47Q6Q0C1 308 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 C19orf48Q6RUI8 117 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 ZDHHC17Q8IUH5 632 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 CCDC185Q8N715 623 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 NIPA2Q8N8Q9 360 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 U2AF1L4Q8WU68 220 aaKnown RBP4.46□□□□□ -1.7
SCFD1-209ENST00000553280 GLYATL1Q969I3 302 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 SLC35C1Q96A29 364 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 GIMAP5Q96F15 307 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 NKX3-1Q99801 234 aaPredicted RBP4.46□□□□□ -1.7
SCFD1-209ENST00000553280 COQ7Q99807 217 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 SSX3Q99909 188 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 ASCL2Q99929 193 aa4.46□□□□□ -1.7
SCFD1-209ENST00000553280 FTHL17Q9BXU8 183 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms