RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 SAP18O00422 153 aaKnown RBP13.33□□□□□ -0.28
PTCH1-226ENST00000553011 RTCAO00442 366 aaKnown RBP13.33□□□□□ -0.28
PTCH1-226ENST00000553011 SOCS6O14544 535 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 DNAJB5O75953 348 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 OR4F21O95013 312 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 CERS1P27544 350 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 PIK3CBP42338 1070 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 NAGLUP54802 743 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 RUNX2Q13950 521 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 LY6DQ14210 128 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 PCLAFQ15004 111 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 MINDY4Q4G0A6 757 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 GGTA1PQ4G0N0 100 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 DEPDC1Q5TB30 811 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 MFSD4BQ5TF39 518 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 NIPAL1Q6NVV3 410 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 UBE3DQ7Z6J8 389 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 C10orf107Q8IVU9 208 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 EXD3Q8N9H8 876 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 TCP10LQ8TDR4 215 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 C8orf44Q96CB5 159 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 REPS1Q96D71 796 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 MTFMTQ96DP5 389 aaKnown RBP13.33□□□□□ -0.28
PTCH1-226ENST00000553011 CCDC126Q96EE4 140 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 CMTM7Q96FZ5 175 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 ZNF382Q96SR6 550 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 ARHGAP9Q9BRR9 750 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 VN1R1Q9GZP7 353 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 PRDM7Q9NQW5 492 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 OXSMQ9NWU1 459 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 P4HTMQ9NXG6 502 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 ADGRE2Q9UHX3 823 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 MKL2Q9ULH7 1088 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 CROCCQ5TZA2 2017 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 CFAP46Q8IYW2 2715 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 PEX12O00623 359 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 TYROBPO43914 113 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 ALOX12BO75342 701 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 CDC123O75794 336 aaPredicted RBP13.32□□□□□ -0.28
PTCH1-226ENST00000553011 ETHE1O95571 254 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 IGHEP01854 428 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 HEXBP07686 556 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 RNH1P13489 461 aaKnown RBP13.32□□□□□ -0.28
PTCH1-226ENST00000553011 HPDP32754 393 aaPredicted RBP13.32□□□□□ -0.28
PTCH1-226ENST00000553011 POLE2P56282 527 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 DNAJB13P59910 316 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 LCP2Q13094 533 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 SGO1Q5FBB7 561 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 TNFAIP8L3Q5GJ75 292 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 TCHHL1Q5QJ38 904 aaPredicted RBP13.32□□□□□ -0.28
PTCH1-226ENST00000553011 KHDRBS2Q5VWX1 349 aaKnown RBP13.32□□□□□ -0.28
PTCH1-226ENST00000553011 FRG2Q64ET8 278 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 TTC19Q6DKK2 380 aaPredicted RBP13.32□□□□□ -0.28
PTCH1-226ENST00000553011 KIRREL2Q6UWL6 708 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 ZNF793Q6ZN11 406 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 CHSY3Q70JA7 882 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 EXOC3L1Q86VI1 746 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 CA13Q8N1Q1 262 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 CDYL2Q8N8U2 506 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 IP6K3Q96PC2 410 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 FRG2BQ96QU4 278 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 SORBS1Q9BX66 1292 aaKnown RBP13.32□□□□□ -0.28
PTCH1-226ENST00000553011 ING2Q9H160 280 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 LANCL2Q9NS86 450 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 SENP1Q9P0U3 644 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 TRPS1Q9UHF7 1281 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 MID2Q9UJV3 735 aa13.32□□□□□ -0.28
PTCH1-226ENST00000553011 FAM227AF5H4B4 570 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 AGPSO00116 658 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 UBFD1O14562 309 aaKnown RBP13.31□□□□□ -0.28
PTCH1-226ENST00000553011 ATXN7O15265 892 aaPredicted RBP13.31□□□□□ -0.28
PTCH1-226ENST00000553011 B3GALT2O43825 422 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 B4GALT2O60909 372 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 MLYCDO95822 493 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 FHP07954 510 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 ALDH3A1P30838 453 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 MTTPP55157 894 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 PHEXP78562 749 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 TGM3Q08188 693 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 IFT88Q13099 833 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 CASP8Q14790 479 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 TMEM35AQ53FP2 167 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 LIPMQ5VYY2 423 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 FRMD7Q6ZUT3 714 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 GPRIN3Q6ZVF9 776 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 CROCCP2Q86T23 111 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 APLFQ8IW19 511 aaPredicted RBP13.31□□□□□ -0.28
PTCH1-226ENST00000553011 SRFBP1Q8NEF9 429 aaKnown RBP13.31□□□□□ -0.28
PTCH1-226ENST00000553011 OR11G2Q8NGC1 345 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 TBC1D20Q96BZ9 403 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 KCNC2Q96PR1 638 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 OR1F2PQ96R84 312 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 SERINC2Q96SA4 455 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 TBCDQ9BTW9 1192 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 MECRQ9BV79 373 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 GATA5Q9BWX5 397 aaPredicted RBP13.31□□□□□ -0.28
PTCH1-226ENST00000553011 ELOVL6Q9H5J4 265 aa13.31□□□□□ -0.28
PTCH1-226ENST00000553011 COPS7BQ9H9Q2 264 aaPredicted RBP13.31□□□□□ -0.28
PTCH1-226ENST00000553011 CLK4Q9HAZ1 481 aaKnown RBP13.31□□□□□ -0.28
PTCH1-226ENST00000553011 FARSBQ9NSD9 589 aaKnown RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms