RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	SYNPO2L	Q9H987	977 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	APMAP	Q9HDC9	416 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	MRGBP	Q9NV56	204 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	LYAR	Q9NX58	379 aa	Known RBP	11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	GIMAP2	Q9UG22	337 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	MCM8	Q9UJA3	840 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	ADAM29	Q9UKF5	820 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	NAALAD2	Q9Y3Q0	740 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658	PCDHB3	Q9Y5E6	796 aa		11.3	□□□□□ -0.6
DDB1-223	ENST00000543658		A0A0A6YYC8	382 aa	Predicted RBP	11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	FAM149A	A5PLN7	773 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	NPIPB8	E9PQR5	432 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658		I3L1I5	382 aa	Predicted RBP	11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	RTCA	O00442	366 aa	Known RBP	11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	ZNF195	O14628	629 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	UBD	O15205	165 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	SNX3	O60493	162 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	KLHL18	O94889	574 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	NSA2	O95478	260 aa	Known RBP	11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	KLK1	P06870	262 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	CTSB	P07858	339 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	ANXA4	P09525	319 aa	Predicted RBP	11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	PIM1	P11309	404 aa	Predicted RBP	11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	PRPS2	P11908	318 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	PCSK2	P16519	638 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	NCF2	P19878	526 aa	Predicted RBP	11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	HIST1H1T	P22492	207 aa	Predicted RBP	11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	CERS1	P27544	350 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	RBMS1	P29558	406 aa	Known RBP	11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	GSTM5	P46439	218 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	MAPK12	P53778	367 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	GABRE	P78334	506 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	EMX2	Q04743	252 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	ZNF763	Q0D2J5	394 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	TBL3	Q12788	808 aa	Known RBP	11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	FOXC1	Q12948	553 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	SLC9A5	Q14940	896 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	LSM12	Q3MHD2	195 aa	Known RBP	11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	ARHGAP40	Q5TG30	622 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	PRMT9	Q6P2P2	845 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	LARP4	Q71RC2	724 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	TMPRSS7	Q7RTY8	843 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	DGLUCY	Q7Z3D6	616 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	EFCAB3	Q8N7B9	438 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	PROKR1	Q8TCW9	393 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	CHTF18	Q8WVB6	975 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	C10orf82	Q8WW14	230 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	C10orf90	Q96M02	699 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	DDA1	Q9BW61	102 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	YIPF2	Q9BWQ6	316 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	DLL3	Q9NYJ7	618 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	DHCR7	Q9UBM7	475 aa	Known RBP	11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	PHF11	Q9UIL8	331 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	G3BP2	Q9UN86	482 aa	Known RBP	11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	CCL27	Q9Y4X3	112 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	FER1L5	A0AVI2	2057 aa		11.29	□□□□□ -0.6
DDB1-223	ENST00000543658	ZNF860	A6NHJ4	632 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658		H0YIG0	161 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	PSMD12	O00232	456 aa	Predicted RBP	11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	GALR3	O60755	368 aa	Predicted RBP	11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	KIAA0754	O94854	1291 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	TBX6	O95947	436 aa	Predicted RBP	11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	KLK3	P07288	261 aa	Predicted RBP	11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	IDO1	P14902	403 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	ACPP	P15309	386 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	DDX5	P17844	614 aa	Known RBP	11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	AGXT	P21549	392 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	FBL	P22087	321 aa	Known RBP	11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	ATP5A1	P25705	553 aa	Known RBP	11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	BSG	P35613	385 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	ETV5	P41161	510 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	BUD31	P41223	144 aa	Predicted RBP	11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	ASMT	P46597	345 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	IRX1	P78414	480 aa	Predicted RBP	11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	SLAMF1	Q13291	335 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	GSTA3	Q16772	222 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	C1orf189	Q5VU69	101 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	IL23R	Q5VWK5	629 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	OGFOD2	Q6N063	350 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	RHBDD2	Q6NTF9	364 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	PWWP2B	Q6NUJ5	590 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	NOXRED1	Q6NXP6	359 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	CACNA2D3	Q8IZS8	1091 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	TMEM132C	Q8N3T6	1108 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	ZCCHC7	Q8N3Z6	543 aa	Known RBP	11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	LIX1	Q8N485	282 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	METTL27	Q8N6F8	245 aa	Predicted RBP	11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	ACOT4	Q8N9L9	421 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	CCDC197	Q8NCU1	140 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	OR9A4	Q8NGU2	314 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	ADAMTS18	Q8TE60	1221 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	COL26A1	Q96A83	441 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	CATSPER2	Q96P56	530 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	OR52B2	Q96RD2	323 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	FAIM2	Q9BWQ8	316 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	SORBS1	Q9BX66	1292 aa	Known RBP	11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	NPL	Q9BXD5	320 aa	Predicted RBP	11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	AICDA	Q9GZX7	198 aa		11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	DDX31	Q9H8H2	851 aa	Known RBP	11.28	□□□□□ -0.6
DDB1-223	ENST00000543658	POLR1B	Q9H9Y6	1135 aa		11.28	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms