RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 SLITRK5O94991 958 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 KRT8P05787 483 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 ARAFP10398 606 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 SRCP12931 536 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 CCL5P13501 91 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 RHCEP18577 417 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 AQP1P29972 269 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 NUDT6P53370 316 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 COPZ1P61923 177 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 TMEM201Q5SNT2 666 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 RNLSQ5VYX0 342 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 AGTRAPQ6RW13 159 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 CYP4Z2PQ8N1L4 340 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 RNF175Q8N4F7 328 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 DBF4BQ8NFT6 615 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 UTP15Q8TED0 518 aaKnown RBP13.17□□□□□ -0.3
VPS33A-208ENST00000543633 ELMO1Q92556 727 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 MAL2Q969L2 176 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 CEP19Q96LK0 163 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 Q96MT0 163 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 SMURF1Q9HCE7 757 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 FZD3Q9NPG1 666 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 RLIMQ9NVW2 624 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 STOX2Q9P2F5 926 aaPredicted RBP13.17□□□□□ -0.3
VPS33A-208ENST00000543633 ZNF221Q9UK13 617 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 KCND3Q9UK17 655 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 ANGPT4Q9Y264 503 aa13.17□□□□□ -0.3
VPS33A-208ENST00000543633 KIF26AQ9ULI4 1882 aaPredicted RBP13.16□□□□□ -0.3
VPS33A-208ENST00000543633 CAPN5O15484 640 aaPredicted RBP13.16□□□□□ -0.3
VPS33A-208ENST00000543633 MYCP01106 439 aaPredicted RBP13.16□□□□□ -0.3
VPS33A-208ENST00000543633 BMPR1AP36894 532 aa13.16□□□□□ -0.3
VPS33A-208ENST00000543633 CRATP43155 626 aa13.16□□□□□ -0.3
VPS33A-208ENST00000543633 PCBP3P57721 371 aaKnown RBP13.16□□□□□ -0.3
VPS33A-208ENST00000543633 IFITM2Q01629 132 aa13.16□□□□□ -0.3
VPS33A-208ENST00000543633 DDX39BQ13838 428 aaKnown RBP13.16□□□□□ -0.3
VPS33A-208ENST00000543633 STARD3Q14849 445 aa13.16□□□□□ -0.3
VPS33A-208ENST00000543633 TMC5Q6UXY8 1006 aa13.16□□□□□ -0.3
VPS33A-208ENST00000543633 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.16□□□□□ -0.3
VPS33A-208ENST00000543633 HTR3DQ70Z44 454 aa13.16□□□□□ -0.3
VPS33A-208ENST00000543633 IL17RCQ8NAC3 791 aa13.16□□□□□ -0.3
VPS33A-208ENST00000543633 OR7G3Q8NG95 312 aa13.16□□□□□ -0.3
VPS33A-208ENST00000543633 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.16□□□□□ -0.3
VPS33A-208ENST00000543633 FAM129BQ96TA1 746 aa13.16□□□□□ -0.3
VPS33A-208ENST00000543633 SDHCQ99643 169 aaPredicted RBP13.16□□□□□ -0.3
VPS33A-208ENST00000543633 SLC35A5Q9BS91 424 aa13.16□□□□□ -0.3
VPS33A-208ENST00000543633 BBS2Q9BXC9 721 aa13.16□□□□□ -0.3
VPS33A-208ENST00000543633 ASAH2Q9NR71 780 aa13.16□□□□□ -0.3
VPS33A-208ENST00000543633 ACER3Q9NUN7 267 aa13.16□□□□□ -0.3
VPS33A-208ENST00000543633 GPATCH2Q9NW75 528 aa13.16□□□□□ -0.3
VPS33A-208ENST00000543633 QPCTLQ9NXS2 382 aa13.16□□□□□ -0.3
VPS33A-208ENST00000543633 WBP11Q9Y2W2 641 aaKnown RBP13.16□□□□□ -0.3
VPS33A-208ENST00000543633 PCDHGB2Q9Y5G2 931 aa13.16□□□□□ -0.3
VPS33A-208ENST00000543633 DSPPQ9NZW4 1301 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 DENND4CQ5VZ89 1909 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 SLC35F4A4IF30 521 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 A8MX80 341 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 CACNB4O00305 520 aaPredicted RBP13.15□□□□□ -0.3
VPS33A-208ENST00000543633 FOXE1O00358 373 aaPredicted RBP13.15□□□□□ -0.3
VPS33A-208ENST00000543633 SGTAO43765 313 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 GPR37L1O60883 481 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 CCNKO75909 580 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 GADD45GO95257 159 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 KRT75O95678 551 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 POP4O95707 220 aaKnown RBP13.15□□□□□ -0.3
VPS33A-208ENST00000543633 ADAP00813 363 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 SCG5P05408 212 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 ETFAP13804 333 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 ZNF24P17028 368 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 SNRPGP62308 76 aaKnown RBP13.15□□□□□ -0.3
VPS33A-208ENST00000543633 CDK6Q00534 326 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 PTGES3Q15185 160 aaKnown RBP13.15□□□□□ -0.3
VPS33A-208ENST00000543633 SF3B4Q15427 424 aaKnown RBP eCLIP13.15□□□□□ -0.3
VPS33A-208ENST00000543633 TSTQ16762 297 aaKnown RBP13.15□□□□□ -0.3
VPS33A-208ENST00000543633 RSBN1Q5VWQ0 802 aaPredicted RBP13.15□□□□□ -0.3
VPS33A-208ENST00000543633 SERPINA13PQ6UXR4 307 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 UNC5DQ6UXZ4 953 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 UBQLNLQ8IYU4 475 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 FBXO15Q8NCQ5 510 aaPredicted RBP13.15□□□□□ -0.3
VPS33A-208ENST00000543633 FAM46DQ8NEK8 389 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 ERLEC1Q96DZ1 483 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 WDR34Q96EX3 536 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 TCF25Q9BQ70 676 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 RNF208Q9H0X6 261 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 AMBNQ9NP70 447 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 MYNNQ9NPC7 610 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 C1GALT1Q9NS00 363 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 SEC14L4Q9UDX3 406 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 MAFFQ9ULX9 164 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 GNG14A0A1W2PPG7 69 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 PSMD11O00231 422 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 ARHGAP33O14559 1287 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 ETHE1O95571 254 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 CYP2A6P11509 494 aaPredicted RBP13.15□□□□□ -0.3
VPS33A-208ENST00000543633 MNX1P50219 401 aaPredicted RBP13.15□□□□□ -0.3
VPS33A-208ENST00000543633 CRISP1P54107 249 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 EPHB3P54753 998 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 POLR2LP62875 67 aaKnown RBP13.15□□□□□ -0.3
VPS33A-208ENST00000543633 ZXDBP98169 803 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 NAE1Q13564 534 aa13.15□□□□□ -0.3
VPS33A-208ENST00000543633 ZNF385BQ569K4 471 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms