RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 TTC29Q8NA56 475 aaPredicted RBP12.31□□□□□ -0.44
CCDC42-202ENST00000539522 OR2T11Q8NH01 316 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 PROKR1Q8TCW9 393 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 C11orf24Q96F05 449 aaPredicted RBP12.31□□□□□ -0.44
CCDC42-202ENST00000539522 SLC29A3Q9BZD2 475 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 ACPTQ9BZG2 426 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 KCNK13Q9HB14 408 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 IRAK4Q9NWZ3 460 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 CTSFQ9UBX1 484 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 CROTQ9UKG9 612 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 PPT2Q9UMR5 302 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 SRPK3Q9UPE1 567 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 NAALAD2Q9Y3Q0 740 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 DNAJC15Q9Y5T4 150 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 USH1CQ9Y6N9 552 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 SCN2AQ99250 2005 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 USP24Q9UPU5 2620 aa12.31□□□□□ -0.44
CCDC42-202ENST00000539522 MGAQ8IWI9 3026 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 ANKRD11Q6UB99 2663 aaPredicted RBP12.3□□□□□ -0.44
CCDC42-202ENST00000539522 IGLV3-12A0A075B6K2 115 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 SERTM1A2A2V5 107 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 ANKDD1BA6NHY2 528 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 RDH16O75452 317 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 EEDO75530 441 aaKnown RBP12.3□□□□□ -0.44
CCDC42-202ENST00000539522 JRKO75564 520 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 NSA2O95478 260 aaKnown RBP12.3□□□□□ -0.44
CCDC42-202ENST00000539522 ENO1P06733 434 aaKnown RBP12.3□□□□□ -0.44
CCDC42-202ENST00000539522 ATXN8OSP0DMR3 200 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 LIFP15018 202 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 ALOX12P18054 663 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 ITPKBP27987 946 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 BSGP35613 385 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 RPS18P62269 152 aaKnown RBP12.3□□□□□ -0.44
CCDC42-202ENST00000539522 HIST2H2ACQ16777 129 aaPredicted RBP12.3□□□□□ -0.44
CCDC42-202ENST00000539522 MUM1Q2TAK8 710 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 FAM214AQ32MH5 1076 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 SGO1Q5FBB7 561 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 KHDRBS2Q5VWX1 349 aaKnown RBP12.3□□□□□ -0.44
CCDC42-202ENST00000539522 HIST2H2AA3Q6FI13 130 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 CLYBLQ8N0X4 340 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 ZNF781Q8N8C0 355 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 TMEM52Q8NDY8 209 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 TTLQ8NG68 377 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 OR2L5Q8NG80 312 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 RFWD2Q8NHY2 731 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 METTL6Q8TCB7 284 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 GAL3ST3Q96A11 431 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 THOC1Q96FV9 657 aaKnown RBP12.3□□□□□ -0.44
CCDC42-202ENST00000539522 MAGEB10Q96LZ2 347 aaPredicted RBP12.3□□□□□ -0.44
CCDC42-202ENST00000539522 CNTNAP3BQ96NU0 1288 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 SPSB2Q99619 263 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 C17orf62Q9BQA9 187 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 CNTNAP3Q9BZ76 1288 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 REXO4Q9GZR2 422 aaKnown RBP12.3□□□□□ -0.44
CCDC42-202ENST00000539522 DCTN4Q9UJW0 460 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 PADI1Q9ULC6 663 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 TRAF6Q9Y4K3 522 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 NBEAQ8NFP9 2946 aa12.3□□□□□ -0.44
CCDC42-202ENST00000539522 MAP1BP46821 2468 aaKnown RBP12.29□□□□□ -0.44
CCDC42-202ENST00000539522 A0A0G2JND7 137 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 OR2W5A6NFC9 320 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 VSTM2BA6NLU5 285 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 TXNDC9O14530 226 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 AZIN1O14977 448 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 HDAC3O15379 428 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 ERI3O43414 337 aaKnown RBP12.29□□□□□ -0.44
CCDC42-202ENST00000539522 SCELO95171 688 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 UMODP07911 640 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 HBQ1P09105 142 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 FURINP09958 794 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 ALOX15P16050 662 aaPredicted RBP12.29□□□□□ -0.44
CCDC42-202ENST00000539522 CERS1P27544 350 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 HNRNPFP52597 415 aaKnown RBP12.29□□□□□ -0.44
CCDC42-202ENST00000539522 PLA2G16P53816 162 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 AQP5P55064 265 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 RAE1P78406 368 aaKnown RBP12.29□□□□□ -0.44
CCDC42-202ENST00000539522 DCDP81605 110 aaKnown RBP12.29□□□□□ -0.44
CCDC42-202ENST00000539522 HMGCS1Q01581 520 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 ABHD18Q0P651 414 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 SF3A3Q12874 501 aaKnown RBP eCLIP12.29□□□□□ -0.44
CCDC42-202ENST00000539522 CUL3Q13618 768 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 DSG2Q14126 1118 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 VWA2Q5GFL6 755 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 Q6ZSR9 355 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 OVCH1Q7RTY7 1134 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 TRIM46Q7Z4K8 759 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 LAPTM4BQ86VI4 370 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 ZC3H7AQ8IWR0 971 aaKnown RBP12.29□□□□□ -0.44
CCDC42-202ENST00000539522 SPACA3Q8IXA5 215 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 CA13Q8N1Q1 262 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 ESX1Q8N693 406 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 ZNF248Q8NDW4 579 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 AGR3Q8TD06 166 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 C10orf82Q8WW14 230 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 ZCCHC14Q8WYQ9 949 aaKnown RBP12.29□□□□□ -0.44
CCDC42-202ENST00000539522 CCT6BQ92526 530 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 MR1Q95460 341 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 UCN3Q969E3 161 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 UBE2E3Q969T4 207 aa12.29□□□□□ -0.44
CCDC42-202ENST00000539522 MVB12AQ96EY5 273 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms