RNA–Protein interactions for RNA: ENST00000538456.3

SMARCA4-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 3

Gene SMARCA4, Length 738 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-206ENST00000538456 ACVR2AP27037 513 aa13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 SSR4P51571 173 aa13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 DLX5P56178 289 aa13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 DHX9Q08211 1270 aaKnown RBP13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 FOXD4Q12950 439 aaPredicted RBP13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 GXYLT1Q4G148 440 aa13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 CATSPEREQ5SY80 951 aa13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 ANKRD22Q5VYY1 191 aa13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 DRICH1Q6PGQ1 229 aaPredicted RBP13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 PAOXQ6QHF9 649 aa13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 CTAGE6Q86UF2 777 aa13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 CAND1Q86VP6 1230 aaKnown RBP13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 TMEM139Q8IV31 216 aa13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 TBC1D19Q8N5T2 526 aa13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 PSD4Q8NDX1 1056 aa13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 ABHD11Q8NFV4 315 aa13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 UTP15Q8TED0 518 aaKnown RBP13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 NINJ1Q92982 152 aa13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 SNF8Q96H20 258 aa13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 PDLIM2Q96JY6 352 aa13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 OR4K3Q96R72 315 aa13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 GPATCH1Q9BRR8 931 aaKnown RBP13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 AARSD1Q9BTE6 412 aaKnown RBP13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 SPNS1Q9H2V7 528 aa13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 LIN28AQ9H9Z2 209 aaKnown RBP13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 SLC24A3Q9HC58 644 aa13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 PNO1Q9NRX1 252 aaKnown RBP13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 C20orf96Q9NUD7 363 aaPredicted RBP13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 ZFATQ9P243 1243 aa13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 ST6GALNAC2Q9UJ37 374 aa13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 ZNF223Q9UK11 482 aaPredicted RBP13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 L3MBTL1Q9Y468 752 aa13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 LIPGQ9Y5X9 500 aa13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 COMMD10Q9Y6G5 202 aa13.04□□□□□ -0.32
SMARCA4-206ENST00000538456 ZCWPW2A0A1B0GU75 182 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 A8MVJ9 347 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 GOLGA8MH3BSY2 632 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 EIF3FO00303 357 aaPredicted RBP13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 PPP2R1BP30154 601 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 RGS4P49798 205 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 SARNPP82979 210 aaKnown RBP13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 GPS1Q13098 491 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 SP140Q13342 867 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 LRRC8EQ6NSJ5 796 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 NIPAL1Q6NVV3 410 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 MYO1HQ8N1T3 1032 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 OR2M7Q8NG81 312 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 OR4K1Q8NGD4 311 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 NT5CQ8TCD5 201 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 NCLNQ969V3 563 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 RMND5BQ96G75 393 aaPredicted RBP13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 TSNARE1Q96NA8 513 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 SMC6Q96SB8 1091 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 TTYH2Q9BSA4 534 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 TTTY12Q9BZ98 90 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 ZNF358Q9NW07 568 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 HPF1Q9NWY4 346 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 ARL15Q9NXU5 204 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 ZFP69BQ9UJL9 534 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 FBXO5Q9UKT4 447 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 GUCA1BQ9UMX6 200 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 PLEKHA6Q9Y2H5 1048 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 FAM215AQ9Y5M1 114 aa13.03□□□□□ -0.32
SMARCA4-206ENST00000538456 A0A0G2JNJ9 132 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 PABPN1LA6NDY0 278 aaKnown RBP13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 FIGNL2A6NMB9 653 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 C4orf51C9J302 202 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 PRKNO60260 465 aaPredicted RBP13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 OR2J2O76002 312 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 OR6B1O95007 311 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 FGGP02679 453 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 HIST1H2AGP0C0S8 130 aaPredicted RBP13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 GLI4P10075 376 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 HIST1H2ADP20671 130 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 ZFP36L2P47974 494 aaKnown RBP13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 TIAL1Q01085 375 aaKnown RBP eCLIP13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 CSHL1Q14406 222 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 HECTD2Q5U5R9 776 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 UGT3A1Q6NUS8 523 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 PAQR3Q6TCH7 311 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 IL20RBQ6UXL0 311 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 B3GNT6Q6ZMB0 384 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 WDR53Q7Z5U6 358 aaPredicted RBP13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 STRA8Q7Z7C7 330 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 LIX1LQ8IVB5 337 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 CA13Q8N1Q1 262 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 RNF10Q8N5U6 811 aaKnown RBP13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 MYRIPQ8NFW9 859 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 CREB3L4Q8TEY5 395 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 ASB15Q8WXK1 588 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 NEIL2Q969S2 332 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 LINGO1Q96FE5 620 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 VMP1Q96GC9 406 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 HIST1H2AHQ96KK5 128 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 HIST1H2AJQ99878 128 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 CCDC77Q9BR77 488 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 H2AFJQ9BTM1 129 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 SARGQ9BW04 601 aa13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 CLEC4MQ9H2X3 399 aaPredicted RBP13.02□□□□□ -0.33
SMARCA4-206ENST00000538456 KLHL31Q9H511 634 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms