RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 NPLQ9BXD5 320 aaPredicted RBP12.23□□□□□ -0.45
VPS28-216ENST00000533806 ACTR8Q9H981 624 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 KCMF1Q9P0J7 381 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 LGALS13Q9UHV8 139 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 ADGRE2Q9UHX3 823 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 ZNF225Q9UK10 706 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 PPT2Q9UMR5 302 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 ANGPTL3Q9Y5C1 460 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 PCDHGA11Q9Y5H2 935 aa12.23□□□□□ -0.45
VPS28-216ENST00000533806 FASNP49327 2511 aaKnown RBP12.23□□□□□ -0.45
VPS28-216ENST00000533806 IGKV3D-11A0A0A0MRZ8 115 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 A6NL46 340 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 MAGEB17A8MXT2 336 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 FAM227AF5H4B4 570 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 FOXE1O00358 373 aaPredicted RBP12.22□□□□□ -0.45
VPS28-216ENST00000533806 CYR61O00622 381 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 CLDN9O95484 217 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 PROCP04070 461 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 C8orf89P0DMQ9 161 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 RNH1P13489 461 aaKnown RBP12.22□□□□□ -0.45
VPS28-216ENST00000533806 IMPDH1P20839 514 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 ATP5F1P24539 256 aaPredicted RBP12.22□□□□□ -0.45
VPS28-216ENST00000533806 CRHR1P34998 444 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 PLA2G16P53816 162 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 PRKAA2P54646 552 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 HERVK_113P63132 956 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 GGTA1PQ4G0N0 100 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 UNC50Q53HI1 259 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 ZNF678Q5SXM1 525 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 KHDRBS2Q5VWX1 349 aaKnown RBP12.22□□□□□ -0.45
VPS28-216ENST00000533806 FAAH2Q6GMR7 532 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 IGFL3Q6UXB1 125 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 ZNF793Q6ZN11 406 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 LANCL3Q6ZV70 420 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 ANKRD37Q7Z713 158 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 RNF175Q8N4F7 328 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 AMER2Q8N7J2 671 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 CCT6BQ92526 530 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 PSMF1Q92530 271 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 CMTM7Q96FZ5 175 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 VPS50Q96JG6 964 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 CDK15Q96Q40 435 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 ERVK-6Q9BXR3 956 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 ZNF717Q9BY31 904 aaPredicted RBP12.22□□□□□ -0.45
VPS28-216ENST00000533806 ROPN1BQ9BZX4 212 aaPredicted RBP12.22□□□□□ -0.45
VPS28-216ENST00000533806 ROPN1Q9HAT0 212 aaPredicted RBP12.22□□□□□ -0.45
VPS28-216ENST00000533806 ZNF160Q9HCG1 818 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 DMRT3Q9NQL9 472 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 GPR83Q9NYM4 423 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 C5AR2Q9P296 337 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 CLDN16Q9Y5I7 305 aa12.22□□□□□ -0.45
VPS28-216ENST00000533806 PRRC2CQ9Y520 2896 aaKnown RBP12.22□□□□□ -0.45
VPS28-216ENST00000533806 A0A0G2JN53 185 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 SMIM23A6NLE4 172 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 PLIN3O60664 434 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 GLRA3O75311 464 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 TGFB1P01137 390 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 TUBBP07437 444 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 KRT15P19012 456 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 KRT4P19013 534 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 TAC1P20366 129 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 NEK2P51955 445 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 PGDP52209 483 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 ARFIP1P53367 373 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 MTTPP55157 894 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 CDH13P55290 713 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 BTG2P78543 158 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 ZRSR2Q15696 482 aaKnown RBP12.21□□□□□ -0.45
VPS28-216ENST00000533806 CPSF6Q16630 551 aaKnown RBP eCLIP12.21□□□□□ -0.45
VPS28-216ENST00000533806 MINDY4Q4G0A6 757 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 TRIM40Q6P9F5 258 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 IGFL2Q6UWQ7 119 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 QSOX2Q6ZRP7 698 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 CHSY3Q70JA7 882 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 CPEB2Q7Z5Q1 589 aaKnown RBP12.21□□□□□ -0.45
VPS28-216ENST00000533806 TRABD2AQ86V40 505 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 RIBC1Q8N443 379 aaPredicted RBP12.21□□□□□ -0.45
VPS28-216ENST00000533806 SRFBP1Q8NEF9 429 aaKnown RBP12.21□□□□□ -0.45
VPS28-216ENST00000533806 L3HYPDHQ96EM0 354 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 FAR2Q96K12 515 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 KCNC2Q96PR1 638 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 TMEM237Q96Q45 408 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 SERINC2Q96SA4 455 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 MTERF1Q99551 399 aaKnown RBP12.21□□□□□ -0.45
VPS28-216ENST00000533806 TBCDQ9BTW9 1192 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 RBCK1Q9BYM8 510 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 LHPPQ9H008 270 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 OR51B5Q9H339 312 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 MKS1Q9NXB0 559 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 GRID1Q9ULK0 1009 aa12.21□□□□□ -0.45
VPS28-216ENST00000533806 NSG1A0A0A6YYJ2 146 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 TCRBV16S1A1N1A0A5B0 115 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 PLPP1O14494 284 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 CDC123O75794 336 aaPredicted RBP12.2□□□□□ -0.46
VPS28-216ENST00000533806 ETHE1O95571 254 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 SERPINA7P05543 415 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 PRR35P0CG20 571 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 PCNAP12004 261 aa12.2□□□□□ -0.46
VPS28-216ENST00000533806 HIST1H1TP22492 207 aaPredicted RBP12.2□□□□□ -0.46
VPS28-216ENST00000533806 JAK1P23458 1154 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms