RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 UTP15Q8TED0 518 aaKnown RBP18.46■□□□□ 0.55
VPS28-213ENST00000530983 ZNF689Q96CS4 500 aaPredicted RBP18.46■□□□□ 0.55
VPS28-213ENST00000530983 CDADC1Q9BWV3 514 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 C1GALT1Q9NS00 363 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 ZNF229Q9UJW7 825 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 MAFFQ9ULX9 164 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 A3GALT2U3KPV4 340 aa18.46■□□□□ 0.55
VPS28-213ENST00000530983 PTX3P26022 381 aaPredicted RBP18.45■□□□□ 0.54
VPS28-213ENST00000530983 CRISP3P54108 245 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 TEKQ02763 1124 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 EEF1A2Q05639 463 aaKnown RBP18.45■□□□□ 0.54
VPS28-213ENST00000530983 ST3GAL4Q11206 333 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 STEAP3Q658P3 488 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 TMEM215Q68D42 235 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 TUBA3EQ6PEY2 450 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 ZNF480Q8WV37 535 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 COL21A1Q96P44 957 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 CCM2Q9BSQ5 444 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 TMEM121BQ9BXQ6 578 aaPredicted RBP18.45■□□□□ 0.54
VPS28-213ENST00000530983 OR51E2Q9H255 320 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 SP140LQ9H930 580 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 NFKBIL1Q9UBC1 381 aaPredicted RBP18.45■□□□□ 0.54
VPS28-213ENST00000530983 ATP11BQ9Y2G3 1177 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 LOC100506127A0A0U1RQW1 187 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 ISPDA4D126 451 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 FAM47E-STBD1D6RA91 191 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 LRG1P02750 347 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 FURINP09958 794 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 TIMP2P16035 220 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 TCEA1P23193 301 aaKnown RBP18.45■□□□□ 0.54
VPS28-213ENST00000530983 RECQLP46063 649 aaPredicted RBP18.45■□□□□ 0.54
VPS28-213ENST00000530983 TBPL1P62380 186 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 RBBP4Q09028 425 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 ELOAQ14241 798 aaKnown RBP18.45■□□□□ 0.54
VPS28-213ENST00000530983 ARSIQ5FYB1 569 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 C10orf62Q5T681 223 aaPredicted RBP18.45■□□□□ 0.54
VPS28-213ENST00000530983 NANOGNBQ7Z5D8 188 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 DEPDC4Q8N2C3 294 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 STX19Q8N4C7 294 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 AMER2Q8N7J2 671 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 GLYATL1Q969I3 302 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 TMEM38AQ9H6F2 299 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 CPNE5Q9HCH3 593 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 PCDHGA3Q9Y5H0 932 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 PDE4DIPQ5VU43 2346 aa18.45■□□□□ 0.54
VPS28-213ENST00000530983 A8MVJ9 347 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 SAP18O00422 153 aaKnown RBP18.44■□□□□ 0.54
VPS28-213ENST00000530983 PCDH17O14917 1159 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 TBX1O43435 398 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 LILRB3O75022 631 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 PBLDP30039 288 aaPredicted RBP18.44■□□□□ 0.54
VPS28-213ENST00000530983 LIMS1P48059 325 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 TMEM115Q12893 351 aaPredicted RBP18.44■□□□□ 0.54
VPS28-213ENST00000530983 PDE7AQ13946 482 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 IRF3Q14653 427 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 CARTPTQ16568 116 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 SLC5A12Q1EHB4 618 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 ZNF181Q2M3W8 571 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 ZNF284Q2VY69 593 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 FBXO43Q4G163 708 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 NLRP8Q86W28 1048 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 LMNTD1Q8N9Z9 388 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 OR5AK3PQ8NH89 298 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 VWCEQ96DN2 955 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 TRIM39Q9HCM9 518 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 CREBZFQ9NS37 354 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 ACER3Q9NUN7 267 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 GULP1Q9UBP9 304 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 CCDC88CQ9P219 2028 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 PRAMEF33A0A0G2JMD5 474 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 PRAMEF10O60809 474 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 KLHL18O94889 574 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 CTSLP07711 333 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 POU2F1P14859 743 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 NPPBP16860 134 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 CA8P35219 290 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 CCR2P41597 374 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 XCR1P46094 333 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 PRIM2P49643 509 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 RGS6P49758 472 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 ATN1P54259 1190 aaPredicted RBP18.44■□□□□ 0.54
VPS28-213ENST00000530983 CYP4F2P78329 520 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 CDK6Q00534 326 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 PRSS53Q2L4Q9 553 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 ARMCX4Q5H9R4 360 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 TPRG1LQ5T0D9 272 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 ATAD3BQ5T9A4 648 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 TECPR1Q7Z6L1 1165 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 RNF130Q86XS8 419 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 WDR48Q8TAF3 677 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 SORCS1Q8WY21 1168 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 VPS35Q96QK1 796 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 CENPOQ9BU64 300 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 RC3H2Q9HBD1 1191 aaKnown RBP18.44■□□□□ 0.54
VPS28-213ENST00000530983 MS4A12Q9NXJ0 267 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 TAS2R16Q9NYV7 291 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 MAP4K5Q9Y4K4 846 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 UGT2A1Q9Y4X1 527 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 NOX1Q9Y5S8 564 aa18.44■□□□□ 0.54
VPS28-213ENST00000530983 CFAP20Q9Y6A4 193 aaKnown RBP18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms