RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 RHOXF1Q8NHV9 184 aa20.34■□□□□ 0.85
VPS28-205ENST00000526204 SLC38A4Q969I6 547 aa20.34■□□□□ 0.85
VPS28-205ENST00000526204 CIDECQ96AQ7 238 aaPredicted RBP20.34■□□□□ 0.85
VPS28-205ENST00000526204 TRIM43Q96BQ3 446 aaPredicted RBP20.34■□□□□ 0.85
VPS28-205ENST00000526204 ANKHQ9HCJ1 492 aa20.34■□□□□ 0.85
VPS28-205ENST00000526204 TMEM184CQ9NVA4 438 aa20.34■□□□□ 0.85
VPS28-205ENST00000526204 GPR34Q9UPC5 381 aa20.34■□□□□ 0.85
VPS28-205ENST00000526204 A0A1W2PRB8 838 aa20.33■□□□□ 0.85
VPS28-205ENST00000526204 SAP18O00422 153 aaKnown RBP20.33■□□□□ 0.85
VPS28-205ENST00000526204 FUCA1P04066 466 aa20.33■□□□□ 0.85
VPS28-205ENST00000526204 KLK1P06870 262 aa20.33■□□□□ 0.85
VPS28-205ENST00000526204 ADH5P11766 374 aa20.33■□□□□ 0.85
VPS28-205ENST00000526204 BCAP31P51572 246 aa20.33■□□□□ 0.85
VPS28-205ENST00000526204 PSMD7P51665 324 aa20.33■□□□□ 0.85
VPS28-205ENST00000526204 DPTQ07507 201 aa20.33■□□□□ 0.85
VPS28-205ENST00000526204 TBCEQ15813 527 aaPredicted RBP20.33■□□□□ 0.85
VPS28-205ENST00000526204 EGFLAMQ63HQ2 1017 aa20.33■□□□□ 0.85
VPS28-205ENST00000526204 TMIEQ8NEW7 156 aa20.33■□□□□ 0.85
VPS28-205ENST00000526204 ZNF556Q9HAH1 456 aa20.33■□□□□ 0.85
VPS28-205ENST00000526204 SLC27A6Q9Y2P4 619 aa20.33■□□□□ 0.85
VPS28-205ENST00000526204 INSL6Q9Y581 213 aa20.33■□□□□ 0.85
VPS28-205ENST00000526204 SPINT1O43278 529 aa20.33■□□□□ 0.84
VPS28-205ENST00000526204 VIPP01282 170 aa20.33■□□□□ 0.84
VPS28-205ENST00000526204 CYP17A1P05093 508 aa20.33■□□□□ 0.84
VPS28-205ENST00000526204 HNRNPA1P09651 372 aaKnown RBP eCLIP20.33■□□□□ 0.84
VPS28-205ENST00000526204 CDH12P55289 794 aa20.33■□□□□ 0.84
VPS28-205ENST00000526204 SLC5A12Q1EHB4 618 aa20.33■□□□□ 0.84
VPS28-205ENST00000526204 MPEG1Q2M385 716 aa20.33■□□□□ 0.84
VPS28-205ENST00000526204 TRIM16LQ309B1 348 aa20.33■□□□□ 0.84
VPS28-205ENST00000526204 ARMC8Q8IUR7 673 aa20.33■□□□□ 0.84
VPS28-205ENST00000526204 ZNF784Q8NCA9 323 aaPredicted RBP20.33■□□□□ 0.84
VPS28-205ENST00000526204 DENND6BQ8NEG7 585 aa20.33■□□□□ 0.84
VPS28-205ENST00000526204 OR6Q1Q8NGQ2 317 aa20.33■□□□□ 0.84
VPS28-205ENST00000526204 ANGPT4Q9Y264 503 aa20.33■□□□□ 0.84
VPS28-205ENST00000526204 SH3GLB1Q9Y371 365 aa20.33■□□□□ 0.84
VPS28-205ENST00000526204 PCDHGA2Q9Y5H1 932 aa20.33■□□□□ 0.84
VPS28-205ENST00000526204 CLCA1A8K7I4 914 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 ZBBXA8MT70 800 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 TOR1BO14657 336 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 HOXC11O43248 304 aaPredicted RBP20.32■□□□□ 0.84
VPS28-205ENST00000526204 POP7O75817 140 aaKnown RBP20.32■□□□□ 0.84
VPS28-205ENST00000526204 LCKP06239 509 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 RB1P06400 928 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 ACADLP28330 430 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 ALDH4A1P30038 563 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 TGFBR2P37173 567 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 OR1E2P47887 323 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 CASP9P55211 416 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 NCS1P62166 190 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 NTHL1P78549 312 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 RNF130Q86XS8 419 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 PLD3Q8IV08 490 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 LGI4Q8N135 537 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 DNAJC22Q8N4W6 341 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 MINDY2Q8NBR6 621 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 OR2L2Q8NH16 312 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 PIP5K1AQ99755 562 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 MROQ9BYG7 248 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 CHCHD3Q9NX63 227 aaKnown RBP20.32■□□□□ 0.84
VPS28-205ENST00000526204 ENOPH1Q9UHY7 261 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 ICKQ9UPZ9 632 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 ZNF451Q9Y4E5 1061 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 MAP4K5Q9Y4K4 846 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 K7ESM1 405 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 VEGFDO43915 354 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 KLHL18O94889 574 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 PAPLNO95428 1278 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 ADH1CP00326 375 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 TNFRSF1BP20333 461 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 CD97P48960 835 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 HMGA2P52926 109 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 TUBA1BP68363 451 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 EXOC3L2Q2M3D2 409 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 TMIGD1Q6UXZ0 262 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 TUBA1AQ71U36 451 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 KRT78Q8N1N4 520 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 PPP1R16AQ96I34 528 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 PSD2Q9BQI7 771 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 MIEF1Q9NQG6 463 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 FKBP14Q9NWM8 211 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 AHSPQ9NZD4 102 aa20.32■□□□□ 0.84
VPS28-205ENST00000526204 FAM32AQ9Y421 112 aaKnown RBP20.32■□□□□ 0.84
VPS28-205ENST00000526204 EFCAB9A8MZ26 197 aa20.31■□□□□ 0.84
VPS28-205ENST00000526204 ARAFP10398 606 aa20.31■□□□□ 0.84
VPS28-205ENST00000526204 C6P13671 934 aa20.31■□□□□ 0.84
VPS28-205ENST00000526204 PCBP3P57721 371 aaKnown RBP20.31■□□□□ 0.84
VPS28-205ENST00000526204 MEF2AQ02078 507 aaPredicted RBP20.31■□□□□ 0.84
VPS28-205ENST00000526204 OXA1LQ15070 435 aa20.31■□□□□ 0.84
VPS28-205ENST00000526204 PRAMEF14Q5SWL7 426 aa20.31■□□□□ 0.84
VPS28-205ENST00000526204 PRAMEF13Q5VWM6 474 aa20.31■□□□□ 0.84
VPS28-205ENST00000526204 LCTLQ6UWM7 567 aa20.31■□□□□ 0.84
VPS28-205ENST00000526204 ZNF605Q86T29 641 aa20.31■□□□□ 0.84
VPS28-205ENST00000526204 ZNF547Q8IVP9 402 aa20.31■□□□□ 0.84
VPS28-205ENST00000526204 CELF5Q8N6W0 485 aaKnown RBP20.31■□□□□ 0.84
VPS28-205ENST00000526204 OR52J3Q8NH60 311 aa20.31■□□□□ 0.84
VPS28-205ENST00000526204 OR8D1Q8WZ84 308 aa20.31■□□□□ 0.84
VPS28-205ENST00000526204 ZHX1-C8orf76Q96EF9 292 aa20.31■□□□□ 0.84
VPS28-205ENST00000526204 ALPK1Q96QP1 1244 aa20.31■□□□□ 0.84
VPS28-205ENST00000526204 ACSL6Q9UKU0 697 aa20.31■□□□□ 0.84
VPS28-205ENST00000526204 DOCK6Q96HP0 2047 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms