RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 APIPQ96GX9 242 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 TCF7L1Q9HCS4 588 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 TREX1Q9NSU2 369 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 ELOVL2Q9NXB9 296 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 PCDHB11Q9Y5F2 797 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 H7C0S8 307 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 TNFRSF10BO14763 440 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 PRMT3O60678 531 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 REM1O75628 298 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 GGT1P19440 569 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 MATN1P21941 496 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 ACADLP28330 430 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 TBPL1P62380 186 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 NFATC3Q12968 1075 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 CTC1Q2NKJ3 1217 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 SLC36A3Q495N2 470 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 EIPR1Q53HC9 387 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 CLLU1OSQ5K130 101 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 SLC25A24Q6NUK1 477 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 ADGRG5Q8IZF4 528 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 SCML4Q8N228 414 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 CELF5Q8N6W0 485 aaKnown RBP12.21□□□□□ -0.46
USP53-209ENST00000514665 CHST14Q8NCH0 376 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 HUS1BQ8NHY5 278 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 C1orf216Q8TAB5 229 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 MGLLQ99685 303 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 MGME1Q9BQP7 344 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 INPP5KQ9BT40 448 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 WACQ9BTA9 647 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 TTYH1Q9H313 450 aaPredicted RBP12.21□□□□□ -0.46
USP53-209ENST00000514665 RNF186Q9NXI6 227 aa12.21□□□□□ -0.46
USP53-209ENST00000514665 NUP205Q92621 2012 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 EDDM13A0A1B0GTR0 161 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 A0A1B0GVG6 124 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 J3QLW9 94 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 RFPL2O75678 378 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 RPP14O95059 124 aaKnown RBP12.2□□□□□ -0.46
USP53-209ENST00000514665 SLC16A8O95907 504 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 GIMD1P0DJR0 217 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 OR12D1P0DN82 309 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 ZNF19P17023 458 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 MYF6P23409 242 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 GNALP38405 381 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 LRP8Q14114 963 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 ZNF805Q5CZA5 627 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 COQ5Q5HYK3 327 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 LIPKQ5VXJ0 399 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 TMEM25Q86YD3 366 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 NETO1Q8TDF5 533 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 HMGB4Q8WW32 186 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 OVCA2Q8WZ82 227 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 ZSWIM3Q96MP5 696 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 SPHK2Q9NRA0 654 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 C14orf119Q9NWQ9 140 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 CRYBG1Q9Y4K1 1723 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 ANXA2P2A6NMY6 339 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 TTC34A8MYJ7 566 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 CAPN5O15484 640 aaPredicted RBP12.2□□□□□ -0.46
USP53-209ENST00000514665 CPNE3O75131 537 aaKnown RBP12.2□□□□□ -0.46
USP53-209ENST00000514665 ANXA2P07355 339 aaKnown RBP12.2□□□□□ -0.46
USP53-209ENST00000514665 C7P10643 843 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 IFI30P13284 250 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 DCTP40126 519 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 GPM6BQ13491 265 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 PTGES3Q15185 160 aaKnown RBP12.2□□□□□ -0.46
USP53-209ENST00000514665 TMEM44Q2T9K0 475 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 SYCE2Q6PIF2 218 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 ZNF783Q6ZMS7 281 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 SLC22A15Q8IZD6 547 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 NATD1Q8N6N6 113 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 C12orf76Q8N812 135 aaPredicted RBP12.2□□□□□ -0.46
USP53-209ENST00000514665 FNDC8Q8TC99 324 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 KHSRPQ92945 711 aaKnown RBP eCLIP12.2□□□□□ -0.46
USP53-209ENST00000514665 SLC22A18Q96BI1 424 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 SLC30A3Q99726 388 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 ANKRD60Q9BZ19 345 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 ANKHQ9HCJ1 492 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 GPN1Q9HCN4 374 aaPredicted RBP12.2□□□□□ -0.46
USP53-209ENST00000514665 BRD7Q9NPI1 651 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 TMEM181Q9P2C4 612 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 MED31Q9Y3C7 131 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 CCRL2O00421 344 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 MID1O15344 667 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 ACVR2AP27037 513 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 RNF144AP50876 292 aaPredicted RBP12.2□□□□□ -0.46
USP53-209ENST00000514665 BCAP31P51572 246 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 ARFIP1P53367 373 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 MC1RQ01726 317 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 IRAK1BP1Q5VVH5 260 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 GOLM1Q8NBJ4 401 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 MDGA1Q8NFP4 955 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 MCHR1Q99705 422 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 MND1Q9BWT6 205 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 MKKSQ9NPJ1 570 aaPredicted RBP12.2□□□□□ -0.46
USP53-209ENST00000514665 ARMC1Q9NVT9 282 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 MARK1Q9P0L2 795 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 SLAMF8Q9P0V8 285 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 CNOT11Q9UKZ1 510 aaKnown RBP12.2□□□□□ -0.46
USP53-209ENST00000514665 CDH7Q9ULB5 785 aa12.2□□□□□ -0.46
USP53-209ENST00000514665 SH3PXD2BA1X283 911 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms