RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 CDRT1O95170 752 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 PAPSS2O95340 614 aaPredicted RBP12.68□□□□□ -0.38
TCOF1-213ENST00000514442 HNMTP50135 292 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 PNLIPRP1P54315 467 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 RGS8P57771 180 aaPredicted RBP12.68□□□□□ -0.38
TCOF1-213ENST00000514442 STXBP1P61764 594 aaKnown RBP12.68□□□□□ -0.38
TCOF1-213ENST00000514442 SRSF11Q05519 484 aaKnown RBP12.68□□□□□ -0.38
TCOF1-213ENST00000514442 RFTN2Q52LD8 501 aaPredicted RBP12.68□□□□□ -0.38
TCOF1-213ENST00000514442 CRTC2Q53ET0 693 aaPredicted RBP12.68□□□□□ -0.38
TCOF1-213ENST00000514442 FRG2Q64ET8 278 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 SUSD1Q6UWL2 747 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 APCDD1Q8J025 514 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 DEFB119Q8N690 84 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 KCT2Q8NC54 265 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 GTPBP3Q969Y2 492 aaKnown RBP12.68□□□□□ -0.38
TCOF1-213ENST00000514442 FRG2BQ96QU4 278 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 ZIC5Q96T25 663 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 MND1Q9BWT6 205 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 CXCL16Q9H2A7 254 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 IL23AQ9NPF7 189 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 KCNN3Q9UGI6 736 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 SLCO3A1Q9UIG8 710 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 PCDHGA8Q9Y5G5 932 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 PITPNM1O00562 1244 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 RB1P06400 928 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 CPN2P22792 545 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 ATP12AP54707 1039 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 PRKCDQ05655 676 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 TAF13Q15543 124 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 NDUFA9Q16795 377 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 AMZ1Q400G9 498 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 RNF111Q6ZNA4 994 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 CEP97Q8IW35 865 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 NXPE1Q8N323 547 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 ARFGAP1Q8N6T3 406 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 ASB15Q8WXK1 588 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 MAELQ96JY0 434 aaKnown RBP12.68□□□□□ -0.38
TCOF1-213ENST00000514442 YIPF4Q9BSR8 244 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 PCBD2Q9H0N5 130 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 EVA1BQ9NVM1 165 aa12.68□□□□□ -0.38
TCOF1-213ENST00000514442 MRPS17Q9Y2R5 130 aaKnown RBP12.68□□□□□ -0.38
TCOF1-213ENST00000514442 SHMT2P34897 504 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 OR4D2P58180 307 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 RAB30Q15771 203 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 PDE12Q6L8Q7 609 aaKnown RBP12.67□□□□□ -0.38
TCOF1-213ENST00000514442 FAM98AQ8NCA5 519 aaKnown RBP12.67□□□□□ -0.38
TCOF1-213ENST00000514442 MMP28Q9H239 520 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 PPA2Q9H2U2 334 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 FAM155AB1AL88 458 aaPredicted RBP12.67□□□□□ -0.38
TCOF1-213ENST00000514442 M0R233 179 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 LDB2O43679 373 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 ANXA8P13928 327 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 PSMA3P25788 255 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 SELENBP1Q13228 472 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 RAPSNQ13702 412 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 BLOC1S3Q6QNY0 202 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 SCD5Q86SK9 330 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 PAPD5Q8NDF8 572 aaKnown RBP12.67□□□□□ -0.38
TCOF1-213ENST00000514442 NSUN5Q96P11 429 aaKnown RBP12.67□□□□□ -0.38
TCOF1-213ENST00000514442 RNF121Q9H920 327 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 CPNE6O95741 557 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 KLK1P06870 262 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 SLC35E2BP0CK96 405 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 SAGP10523 405 aaPredicted RBP12.67□□□□□ -0.38
TCOF1-213ENST00000514442 CCR8P51685 355 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 ARSDP51689 593 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 NTHL1P78549 312 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 NFATC2Q13469 925 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 LRIT3Q3SXY7 679 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 AKIRIN2Q53H80 203 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 RNASE12Q5GAN4 147 aaKnown RBP12.67□□□□□ -0.38
TCOF1-213ENST00000514442 ZNF776Q68DI1 518 aaPredicted RBP12.67□□□□□ -0.38
TCOF1-213ENST00000514442 SMYD5Q6GMV2 418 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 PSAPL1Q6NUJ1 521 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 LRRC70Q7Z2Q7 622 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 PMEPA1Q969W9 287 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 GAL3ST4Q96RP7 486 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 DHRS9Q9BPW9 319 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 EPOP01588 193 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 PRSS56P0CW18 603 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 CDC20Q12834 499 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 BCL7AQ4VC05 210 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 ESCO2Q56NI9 601 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 SPATC1Q76KD6 591 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 TFGQ92734 400 aaPredicted RBP12.67□□□□□ -0.38
TCOF1-213ENST00000514442 DPCDQ9BVM2 203 aaPredicted RBP12.67□□□□□ -0.38
TCOF1-213ENST00000514442 MAU2Q9Y6X3 613 aa12.67□□□□□ -0.38
TCOF1-213ENST00000514442 A0A1W2PRB8 838 aa12.66□□□□□ -0.38
TCOF1-213ENST00000514442 MANBAO00462 879 aa12.66□□□□□ -0.38
TCOF1-213ENST00000514442 PGRMC2O15173 223 aa12.66□□□□□ -0.38
TCOF1-213ENST00000514442 KHDRBS3O75525 346 aaKnown RBP12.66□□□□□ -0.38
TCOF1-213ENST00000514442 CCNB2O95067 398 aa12.66□□□□□ -0.38
TCOF1-213ENST00000514442 G6PDP11413 515 aa12.66□□□□□ -0.38
TCOF1-213ENST00000514442 PEPDP12955 493 aa12.66□□□□□ -0.38
TCOF1-213ENST00000514442 LAMP2P13473 410 aa12.66□□□□□ -0.38
TCOF1-213ENST00000514442 ARCN1P48444 511 aaKnown RBP12.66□□□□□ -0.38
TCOF1-213ENST00000514442 GALEQ14376 348 aa12.66□□□□□ -0.38
TCOF1-213ENST00000514442 NDUFAF6Q330K2 333 aa12.66□□□□□ -0.38
TCOF1-213ENST00000514442 FBXO15Q8NCQ5 510 aaPredicted RBP12.66□□□□□ -0.38
TCOF1-213ENST00000514442 KAT2AQ92830 837 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms