RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 I3L521 148 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 LINC01387J3KSC0 135 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 BTN3A1O00481 513 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 PSMD3O43242 534 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 HCRTR1O43613 425 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 JRKO75564 520 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 TIAF1O95411 115 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 FTH1P02794 183 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 PRKCAP17252 672 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 TCN2P20062 427 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 OTX2P32243 289 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 OR1D4P47884 311 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 NUP107P57740 925 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 VSX2P58304 361 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 RPP38P78345 283 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 MYBPC1Q00872 1141 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 PDK3Q15120 406 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 GPR68Q15743 365 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 MINDY4Q4G0A6 757 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 KRT77Q7Z794 578 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 ACTRT1Q8TDG2 376 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 DENND1AQ8TEH3 1009 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 EEF1AKMT1Q8WVE0 214 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 NXPE2Q96DL1 559 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 LINGO1Q96FE5 620 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 PITHD1Q9GZP4 211 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 MRM3Q9HC36 420 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 IL17BQ9UHF5 180 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 NOSIPQ9Y314 301 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 MSRB2Q9Y3D2 182 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 MED12Q93074 2177 aa7.57□□□□□ -1.2
LIMCH1-219ENST00000514096 FEZF1A0PJY2 475 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 MAGEB16A2A368 324 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 TNFRSF10CO14798 259 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 NKX2-8O15522 239 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 VEGFDO43915 354 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 NADKO95544 446 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 GSTM1P09488 218 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 PKMP14618 531 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 ZNF28P17035 718 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 CYP2A7P20853 494 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 PGM1P36871 562 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 HSD17B3P37058 310 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 TTPAP49638 278 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 NAE1Q13564 534 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 COTL1Q14019 142 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 PEAR1Q5VY43 1037 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 AMIGO1Q86WK6 493 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 PLXDC1Q8IUK5 500 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 UTP15Q8TED0 518 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 SLC5A11Q8WWX8 675 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 GATA6Q92908 595 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 BORCS5Q969J3 196 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 RBM18Q96H35 190 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 ECSITQ9BQ95 431 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 GPN2Q9H9Y4 310 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 ARL15Q9NXU5 204 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 ENOPH1Q9UHY7 261 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 SLC24A2Q9UI40 661 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 IFT52Q9Y366 437 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 COLEC10Q9Y6Z7 277 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 PCM1Q15154 2024 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 CXorf49A8MYA2 514 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 H7BY64 318 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 SHOXO15266 292 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 NUDT21O43809 227 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 PSMG1O95456 288 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 RNF224P0DH78 156 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 CCNA2P20248 432 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 PRDX3P30048 256 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 CCT3P49368 545 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 CAPZA1P52907 286 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 LIMK1P53667 647 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 KCNJ11Q14654 390 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 DEFB109BQ30KR1 87 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 MANEAQ5SRI9 462 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 LPCAT4Q643R3 524 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 RPS27LQ71UM5 84 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 SLC22A9Q8IVM8 553 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 TRPC4APQ8TEL6 797 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 COX14Q96I36 57 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 CNDP1Q96KN2 507 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 PRAP1Q96NZ9 151 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 HBEGFQ99075 208 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 DRG1Q9Y295 367 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 MYO7BQ6PIF6 2116 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 PRSS44E7EML9 344 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 NOS1APO75052 506 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 GPC4O75487 556 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 AHSGP02765 367 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 SLC26A3P40879 764 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 NPY2RP49146 381 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 ARFIP1P53367 373 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 NFATC3Q12968 1075 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 GFOD2Q3B7J2 385 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 RNASEH2BQ5TBB1 312 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 ETFRF1Q6IPR1 90 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 KRT80Q6KB66 452 aa7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 UBE2R2Q712K3 238 aaPredicted RBP7.56□□□□□ -1.2
LIMCH1-219ENST00000514096 TMPRSS7Q7RTY8 843 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms