RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 REXO4Q9GZR2 422 aaKnown RBP9.14□□□□□ -0.95
RNF4-221ENST00000513643 MRPL46Q9H2W6 279 aaKnown RBP9.14□□□□□ -0.95
RNF4-221ENST00000513643 ZNF160Q9HCG1 818 aa9.14□□□□□ -0.95
RNF4-221ENST00000513643 XPR1Q9UBH6 696 aa9.14□□□□□ -0.95
RNF4-221ENST00000513643 ADGRE2Q9UHX3 823 aa9.14□□□□□ -0.95
RNF4-221ENST00000513643 PCTPQ9UKL6 214 aa9.14□□□□□ -0.95
RNF4-221ENST00000513643 PPIEQ9UNP9 301 aaKnown RBP9.14□□□□□ -0.95
RNF4-221ENST00000513643 IKBKGQ9Y6K9 419 aa9.14□□□□□ -0.95
RNF4-221ENST00000513643 NUP210LQ5VU65 1888 aa9.14□□□□□ -0.95
RNF4-221ENST00000513643 NSG1A0A0A6YYJ2 146 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 TCRBV16S1A1N1A0A5B0 115 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 ANKDD1BA6NHY2 528 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 FAM227AF5H4B4 570 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 FOXE1O00358 373 aaPredicted RBP9.13□□□□□ -0.95
RNF4-221ENST00000513643 DPM1O60762 260 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 SHBGP04278 402 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 SERPIND1P05546 499 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 RPS17P08708 135 aaKnown RBP9.13□□□□□ -0.95
RNF4-221ENST00000513643 ICAM2P13598 275 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 GFAPP14136 432 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 VSNL1P62760 191 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 OLR1P78380 273 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 BTN3A2P78410 334 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 TLE1Q04724 770 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 TRAF3Q13114 568 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 RAPSNQ13702 412 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 GTF2H2Q13888 395 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 PLEKHN1Q494U1 663 aaPredicted RBP9.13□□□□□ -0.95
RNF4-221ENST00000513643 TMEM35AQ53FP2 167 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 TEX35Q5T0J7 233 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 AGAP7PQ5VUJ5 663 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 SLC6A19Q695T7 634 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 GTF2H2CQ6P1K8 395 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 MED27Q6P2C8 311 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 ZNF793Q6ZN11 406 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 LANCL3Q6ZV70 420 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 KBTBD2Q8IY47 623 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 CYP4X1Q8N118 509 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 ARMC10Q8N2F6 343 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 PTGR2Q8N8N7 351 aaPredicted RBP9.13□□□□□ -0.95
RNF4-221ENST00000513643 NFAM1Q8NET5 270 aaPredicted RBP9.13□□□□□ -0.95
RNF4-221ENST00000513643 M1APQ8TC57 530 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 ZNF483Q8TF39 744 aaPredicted RBP9.13□□□□□ -0.95
RNF4-221ENST00000513643 EXT2Q93063 718 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 MIB2Q96AX9 1013 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 THOC3Q96J01 351 aaKnown RBP9.13□□□□□ -0.95
RNF4-221ENST00000513643 AGAP4Q96P64 663 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 F2RL3Q96RI0 385 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 YIPF2Q9BWQ6 316 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 ZNF717Q9BY31 904 aaPredicted RBP9.13□□□□□ -0.95
RNF4-221ENST00000513643 IPPKQ9H8X2 491 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 PPCSQ9HAB8 311 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 RIC8BQ9NVN3 520 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 TMEM216Q9P0N5 145 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 PSMC3IPQ9P2W1 217 aaPredicted RBP9.13□□□□□ -0.95
RNF4-221ENST00000513643 ZNF225Q9UK10 706 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 DAPP1Q9UN19 280 aa9.13□□□□□ -0.95
RNF4-221ENST00000513643 HEMK1Q9Y5R4 338 aaPredicted RBP9.13□□□□□ -0.95
RNF4-221ENST00000513643 SHANK1Q9Y566 2161 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 IGHV3-20A0A0C4DH32 117 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 IQANK1A0A1B0GTG1 560 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 A0A1B0GTL3 188 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 CLEC18AA5D8T8 446 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 A8MT66 165 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 ESPNB1AK53 854 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 TGFBR3LH3BV60 316 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 PPP6CO00743 305 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 ERI3O43414 337 aaKnown RBP9.12□□□□□ -0.95
RNF4-221ENST00000513643 WISP1O95388 367 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 ALPPP05187 535 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 CELA2AP08217 269 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 GSTA1P08263 222 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 NUDT17P0C025 328 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 RNH1P13489 461 aaKnown RBP9.12□□□□□ -0.95
RNF4-221ENST00000513643 JAK1P23458 1154 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 ATP5A1P25705 553 aaKnown RBP9.12□□□□□ -0.95
RNF4-221ENST00000513643 ITGA3P26006 1051 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 EEF1DP29692 281 aaKnown RBP9.12□□□□□ -0.95
RNF4-221ENST00000513643 HPDP32754 393 aaPredicted RBP9.12□□□□□ -0.95
RNF4-221ENST00000513643 HSD17B3P37058 310 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 TSFMP43897 325 aaKnown RBP9.12□□□□□ -0.95
RNF4-221ENST00000513643 PIK3CGP48736 1102 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 GPR143P51810 404 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 HNRNPFP52597 415 aaKnown RBP9.12□□□□□ -0.95
RNF4-221ENST00000513643 MTTPP55157 894 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 LIM2P55344 173 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 HSD17B7P56937 341 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 RAB38P57729 211 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 BTG2P78543 158 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 EEF1A2Q05639 463 aaKnown RBP9.12□□□□□ -0.95
RNF4-221ENST00000513643 MFAP5Q13361 173 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 CUL3Q13618 768 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 ABRAXAS2Q15018 415 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 NSDHLQ15738 373 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 HIST2H2ACQ16777 129 aaPredicted RBP9.12□□□□□ -0.95
RNF4-221ENST00000513643 MINDY4Q4G0A6 757 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 GGTA1PQ4G0N0 100 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 KHDRBS2Q5VWX1 349 aaKnown RBP9.12□□□□□ -0.95
RNF4-221ENST00000513643 HIST2H2AA3Q6FI13 130 aa9.12□□□□□ -0.95
RNF4-221ENST00000513643 FAAH2Q6GMR7 532 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms