RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 PIM1P11309 404 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 AMD1P17707 334 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 ETV3P41162 512 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 ARPC4P59998 168 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 VEZF1Q14119 521 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 LARS2Q15031 903 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 METTL2BQ6P1Q9 378 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 SMARCD3Q6STE5 483 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 CRTC1Q6UUV9 634 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 SUN5Q8TC36 379 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 TRIB2Q92519 343 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 MS4A4AQ96JQ5 239 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 TCRBV5S2A0A599 114 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 TMX2-CTNND1H3BSU7 103 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 INPPL1O15357 1258 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 GSTT2P0CG29 244 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 GSTT2BP0CG30 244 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 GSTM3P21266 225 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 RPL4P36578 427 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 CLCN7P51798 805 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 FPGSQ05932 587 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 RGS1Q08116 209 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 NDUFAF6Q330K2 333 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 PEX5LQ8IYB4 626 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 KLHL36Q8N4N3 616 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 NATD1Q8N6N6 113 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 OR9Q2Q8NGE9 314 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 EFHD2Q96C19 240 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 ZNF514Q96K75 400 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 TMED9Q9BVK6 235 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 DPP7Q9UHL4 492 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 GABRQQ9UN88 632 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 NOTOA8MTQ0 251 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 NOS1APO75052 506 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 POP7O75817 140 aaKnown RBP8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 ADH1CP00326 375 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 IGLV3-25P01717 112 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 HOXD8P13378 290 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 RHCEP18577 417 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 TACR1P25103 407 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 NR4A2P43354 598 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 AVPR1BP47901 424 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 DAPP51397 102 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 GSTM4Q03013 218 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 TMEM115Q12893 351 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 GINS1Q14691 196 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 ZNF311Q5JNZ3 666 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 FAM46CQ5VWP2 391 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 ASB18Q6ZVZ8 466 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 SLC7A5P1Q8MH63 180 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 OR10H4Q8NGA5 316 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 EPYCQ99645 322 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 MROQ9BYG7 248 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 NEUROD4Q9HD90 331 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 PAK6Q9NQU5 681 aaPredicted RBP8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 MCUBQ9NWR8 336 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 ANKMY1Q9P2S6 941 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 TAC3Q9UHF0 121 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 INSL5Q9Y5Q6 135 aa8.09□□□□□ -1.11
LIMCH1-216ENST00000512820 GOLGA4Q13439 2230 aaKnown RBP8.09□□□□□ -1.12
LIMCH1-216ENST00000512820 E7EQ34 232 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 SMAD6O43541 496 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 WBP4O75554 376 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 CPNE6O95741 557 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 CH25HO95992 272 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 DNTTP04053 509 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 PCCBP05166 539 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 RB1P06400 928 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 IL3P08700 152 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 LAMP2P13473 410 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 TCF3P15923 654 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 UQCRC2P22695 453 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 CNR2P34972 360 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 GGT2P36268 569 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 CCR8P51685 355 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 SELENOWP63302 87 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 AMZ2Q86W34 360 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 OR9A1PQ8NGU1 263 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 CAMK1GQ96NX5 476 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 TMEM246Q9BRR3 403 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 CCDC32Q9BV29 185 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 OR2B2Q9GZK3 357 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 PCBD2Q9H0N5 130 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 SMG9Q9H0W8 520 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 CALML5Q9NZT1 146 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 HSFX1Q9UBD0 423 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 IL36AQ9UHA7 158 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 GRIP1Q9Y3R0 1128 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 IGLV3-10A0A075B6K4 115 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 AQP9O43315 295 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 AKAP8O43823 692 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 NUAK1O60285 661 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 KHDRBS3O75525 346 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 APOL3O95236 402 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 RAB36O95755 333 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 ATP12AP54707 1039 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 ACVR1Q04771 509 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 SUZ12Q15022 739 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 MICAQ29983 383 aa8.08□□□□□ -1.12
LIMCH1-216ENST00000512820 TMEM44Q2T9K0 475 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms