RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 TGM4P49221 684 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 IFITM2Q01629 132 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 BCL7AQ4VC05 210 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 ARMCX6Q7L4S7 300 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 MMP21Q8N119 569 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 WDR48Q8TAF3 677 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 C11orf24Q96F05 449 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 FCRL1Q96LA6 429 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 TMEM175Q9BSA9 504 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 IL21Q9HBE4 155 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 C11orf16Q9NQ32 467 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 ACER3Q9NUN7 267 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 ZNF282Q9UDV7 671 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 PEX16Q9Y5Y5 336 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 MYOFQ9NZM1 2061 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 PDZK1P1A8MUH7 402 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 NPIPB8E9PQR5 432 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 DYRK3O43781 588 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 GABRB1P18505 474 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 PPIBP23284 216 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 TIA1P31483 386 aaKnown RBP eCLIP8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 DEFA1P59665 94 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 DEFA3P59666 94 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 RPS26P62854 115 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 DUSP7Q16829 419 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 TUBA3EQ6PEY2 450 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 GAREM2Q75VX8 874 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 BCDIN3DQ7Z5W3 292 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 DENND6BQ8NEG7 585 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 OR4C15Q8NGM1 316 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 SORCS1Q8WY21 1168 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 NEDD4LQ96PU5 975 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 FBXL12Q9NXK8 326 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 CLEC2DQ9UHP7 191 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 UGT2A1Q9Y4X1 527 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 TRBC2A0A5B9 178 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 EIF3FO00303 357 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 GPX5O75715 221 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 CATP04040 527 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 KRT8P05787 483 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 IMPA1P29218 277 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 TNFSF8P32971 234 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 SOX6P35712 828 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 BMPR1AP36894 532 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 SOX3P41225 446 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 CSNK1DP48730 415 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 PTPN5P54829 565 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 MPPE1Q53F39 396 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 NXNL2Q5VZ03 156 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 GRHL2Q6ISB3 625 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 CPA6Q8N4T0 437 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 ZNF740Q8NDX6 193 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 FIBINQ8TAL6 211 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 CHTF18Q8WVB6 975 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 COQ8BQ96D53 544 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 ECHDC3Q96DC8 303 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 MRPL17Q9NRX2 175 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 DNAJC27Q9NZQ0 273 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 HCN4Q9Y3Q4 1203 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 KCNE2Q9Y6J6 123 aa8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 MKI67P46013 3256 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-215ENST00000512632 H0YIV9 168 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 TFECO14948 347 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 TNFRSF21O75509 655 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 PTTG1O95997 202 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 CHMP24386 653 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 HNRNPFP52597 415 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 TAS2R50P59544 299 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 CDC42P60953 191 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 MXD1Q05195 221 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 TAB1Q15750 504 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 MPEG1Q2M385 716 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 FRMPD2BQ6IN97 320 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 COMMD6Q7Z4G1 85 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 NRARPQ7Z6K4 114 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 HOMEZQ8IX15 550 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 SLC34A3Q8N130 599 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 ZNF366Q8N895 744 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 TRMT2BQ96GJ1 504 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 ZNF486Q96H40 463 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 TMEM169Q96HH4 297 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 DMRTB1Q96MA1 342 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 MCCC1Q96RQ3 725 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 SORBS1Q9BX66 1292 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 BOLA1Q9Y3E2 137 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 INSL5Q9Y5Q6 135 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 PNMA8CA0A1B0GUJ8 204 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 A0A1W2PRU2 124 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 TTC36A6NLP5 189 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 E9PQ18 207 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 ZNF197O14709 1029 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 POP4O95707 220 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 WEE1P30291 646 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 SLC15A1P46059 708 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 PRKCDQ05655 676 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 FBXO43Q4G163 708 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 ZMAT1Q5H9K5 638 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 ASTLQ6HA08 431 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 TMEM25Q86YD3 366 aa8.86□□□□□ -0.99
LIMCH1-215ENST00000512632 RASGEF1AQ8N9B8 481 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms