RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 FAM131AQ6UXB0 335 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 CREB3L2Q70SY1 520 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 UBE2R2Q712K3 238 aaPredicted RBP17.04■□□□□ 0.32
NUP54-205ENST00000507257 NAGSQ8N159 534 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 CADM2Q8N3J6 435 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 OR9Q2Q8NGE9 314 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 OR9Q1Q8NGQ5 310 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 WDR20Q8TBZ3 569 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 PLD4Q96BZ4 506 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 RNF31Q96EP0 1072 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 DHRS9Q9BPW9 319 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 MED18Q9BUE0 208 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 GTPBP2Q9BX10 602 aaKnown RBP17.04■□□□□ 0.32
NUP54-205ENST00000507257 MKRN2Q9H000 416 aaKnown RBP17.04■□□□□ 0.32
NUP54-205ENST00000507257 MIXL1Q9H2W2 232 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 FAM83DQ9H4H8 585 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 BRF2Q9HAW0 419 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 GABRQQ9UN88 632 aa17.04■□□□□ 0.32
NUP54-205ENST00000507257 CCL15-CCL14A0A0B4J2E2 113 aa17.03■□□□□ 0.32
NUP54-205ENST00000507257 A0A0G2JMP0 313 aa17.03■□□□□ 0.32
NUP54-205ENST00000507257 HCN1O60741 890 aa17.03■□□□□ 0.32
NUP54-205ENST00000507257 IFNA14P01570 189 aa17.03■□□□□ 0.32
NUP54-205ENST00000507257 CYP17A1P05093 508 aa17.03■□□□□ 0.32
NUP54-205ENST00000507257 HIST1H2AGP0C0S8 130 aaPredicted RBP17.03■□□□□ 0.32
NUP54-205ENST00000507257 HIST1H2ADP20671 130 aa17.03■□□□□ 0.32
NUP54-205ENST00000507257 SPAM1P38567 509 aa17.03■□□□□ 0.32
NUP54-205ENST00000507257 HTR2BP41595 481 aa17.03■□□□□ 0.32
NUP54-205ENST00000507257 OR3A3P47888 321 aa17.03■□□□□ 0.32
NUP54-205ENST00000507257 GAB1Q13480 694 aa17.03■□□□□ 0.32
NUP54-205ENST00000507257 CCL15Q16663 113 aa17.03■□□□□ 0.32
NUP54-205ENST00000507257 MFSD4BQ5TF39 518 aa17.03■□□□□ 0.32
NUP54-205ENST00000507257 RNF219Q5W0B1 726 aaPredicted RBP17.03■□□□□ 0.32
NUP54-205ENST00000507257 KLHL17Q6TDP4 642 aa17.03■□□□□ 0.32
NUP54-205ENST00000507257 UTS2BQ765I0 119 aa17.03■□□□□ 0.32
NUP54-205ENST00000507257 CCDC28AQ8IWP9 274 aa17.03■□□□□ 0.32
NUP54-205ENST00000507257 NANOGP1Q8N7R0 232 aa17.03■□□□□ 0.32
NUP54-205ENST00000507257 ASB11Q8WXH4 323 aa17.03■□□□□ 0.32
NUP54-205ENST00000507257 MAL2Q969L2 176 aa17.03■□□□□ 0.32
NUP54-205ENST00000507257 HIST1H2AHQ96KK5 128 aa17.03■□□□□ 0.32
NUP54-205ENST00000507257 FAM193BQ96PV7 902 aaPredicted RBP17.03■□□□□ 0.32
NUP54-205ENST00000507257 HIST1H2AJQ99878 128 aa17.03■□□□□ 0.32
NUP54-205ENST00000507257 H2AFJQ9BTM1 129 aa17.03■□□□□ 0.32
NUP54-205ENST00000507257 SNTG1Q9NSN8 517 aa17.03■□□□□ 0.32
NUP54-205ENST00000507257 ENPP4Q9Y6X5 453 aa17.03■□□□□ 0.32
NUP54-205ENST00000507257 PRAMEF25A6NGN4 478 aa17.02■□□□□ 0.32
NUP54-205ENST00000507257 H3BM21 787 aa17.02■□□□□ 0.32
NUP54-205ENST00000507257 PCDH7O60245 1069 aa17.02■□□□□ 0.32
NUP54-205ENST00000507257 B4GALT3O60512 393 aa17.02■□□□□ 0.32
NUP54-205ENST00000507257 C1SP09871 688 aa17.02■□□□□ 0.32
NUP54-205ENST00000507257 ALPIP09923 528 aa17.02■□□□□ 0.32
NUP54-205ENST00000507257 BPIP17213 487 aa17.02■□□□□ 0.32
NUP54-205ENST00000507257 RHCEP18577 417 aa17.02■□□□□ 0.32
NUP54-205ENST00000507257 AQP1P29972 269 aa17.02■□□□□ 0.32
NUP54-205ENST00000507257 CNR2P34972 360 aa17.02■□□□□ 0.32
NUP54-205ENST00000507257 KIR2DL3P43628 341 aa17.02■□□□□ 0.32
NUP54-205ENST00000507257 SMARCB1Q12824 385 aa17.02■□□□□ 0.32
NUP54-205ENST00000507257 KCNC3Q14003 757 aa17.02■□□□□ 0.32
NUP54-205ENST00000507257 CTXN3Q4LDR2 81 aa17.02■□□□□ 0.32
NUP54-205ENST00000507257 PDZK1Q5T2W1 519 aa17.02■□□□□ 0.32
NUP54-205ENST00000507257 GCNT6Q5T4J0 391 aa17.02■□□□□ 0.32
NUP54-205ENST00000507257 SAXO2Q658L1 398 aa17.02■□□□□ 0.32
NUP54-205ENST00000507257 ZNF770Q6IQ21 691 aaPredicted RBP17.02■□□□□ 0.32
NUP54-205ENST00000507257 DUSP18Q8NEJ0 188 aa17.02■□□□□ 0.32
NUP54-205ENST00000507257 OR52N2Q8NGI0 321 aa17.02■□□□□ 0.32
NUP54-205ENST00000507257 VANGL1Q8TAA9 524 aaPredicted RBP17.02■□□□□ 0.32
NUP54-205ENST00000507257 BRI3BPQ8WY22 251 aa17.02■□□□□ 0.32
NUP54-205ENST00000507257 PARK7Q99497 189 aaKnown RBP17.02■□□□□ 0.32
NUP54-205ENST00000507257 COPS8Q99627 209 aa17.02■□□□□ 0.32
NUP54-205ENST00000507257 ZDHHC3Q9NYG2 299 aa17.02■□□□□ 0.32
NUP54-205ENST00000507257 SLC6A14Q9UN76 642 aa17.02■□□□□ 0.32
NUP54-205ENST00000507257 LOC105371267A0A1B0GV96 52 aa17.02■□□□□ 0.31
NUP54-205ENST00000507257 FABP12A6NFH5 140 aa17.02■□□□□ 0.31
NUP54-205ENST00000507257 OR6C70A6NIJ9 312 aa17.02■□□□□ 0.31
NUP54-205ENST00000507257 GABRR3A8MPY1 467 aa17.02■□□□□ 0.31
NUP54-205ENST00000507257 FADS2P1A8MWK0 482 aa17.02■□□□□ 0.31
NUP54-205ENST00000507257 POLR1CO15160 346 aaPredicted RBP17.02■□□□□ 0.31
NUP54-205ENST00000507257 ADAP00813 363 aa17.02■□□□□ 0.31
NUP54-205ENST00000507257 SRPRAP08240 638 aaKnown RBP17.02■□□□□ 0.31
NUP54-205ENST00000507257 IDSP22304 550 aa17.02■□□□□ 0.31
NUP54-205ENST00000507257 ALAS2P22557 587 aa17.02■□□□□ 0.31
NUP54-205ENST00000507257 AZGP1P25311 298 aaKnown RBP17.02■□□□□ 0.31
NUP54-205ENST00000507257 PTBP1P26599 531 aaKnown RBP eCLIP17.02■□□□□ 0.315e-7■■■■□ 20.9
NUP54-205ENST00000507257 RHOAP61586 193 aa17.02■□□□□ 0.31
NUP54-205ENST00000507257 EEF1A2Q05639 463 aaKnown RBP17.02■□□□□ 0.31
NUP54-205ENST00000507257 ACSM2AQ08AH3 577 aa17.02■□□□□ 0.31
NUP54-205ENST00000507257 CHIT1Q13231 466 aa17.02■□□□□ 0.31
NUP54-205ENST00000507257 CHRNA6Q15825 494 aa17.02■□□□□ 0.31
NUP54-205ENST00000507257 ACSM2BQ68CK6 577 aa17.02■□□□□ 0.31
NUP54-205ENST00000507257 ELMOD2Q8IZ81 293 aa17.02■□□□□ 0.31
NUP54-205ENST00000507257 ADGRG2Q8IZP9 1017 aa17.02■□□□□ 0.31
NUP54-205ENST00000507257 TTC16Q8NEE8 873 aa17.02■□□□□ 0.31
NUP54-205ENST00000507257 OR52J3Q8NH60 311 aa17.02■□□□□ 0.31
NUP54-205ENST00000507257 BHLHE41Q9C0J9 482 aaPredicted RBP17.02■□□□□ 0.31
NUP54-205ENST00000507257 GIMAP4Q9NUV9 329 aa17.02■□□□□ 0.31
NUP54-205ENST00000507257 KCND3Q9UK17 655 aa17.02■□□□□ 0.31
NUP54-205ENST00000507257 GFYI3L273 518 aa17.01■□□□□ 0.31
NUP54-205ENST00000507257 M0R129 80 aa17.01■□□□□ 0.31
NUP54-205ENST00000507257 PCDH17O14917 1159 aa17.01■□□□□ 0.31
NUP54-205ENST00000507257 SHOXO15266 292 aa17.01■□□□□ 0.31
NUP54-205ENST00000507257 PLA2G10O15496 165 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms