RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 TTC5Q8N0Z6 440 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 LSMEM2Q8N112 164 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 RNF10Q8N5U6 811 aaKnown RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 CPSF7Q8N684 471 aaKnown RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 TRIML2Q8N7C3 387 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 SYT2Q8N9I0 419 aaPredicted RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 SUMF1Q8NBK3 374 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 OR2T6Q8NHC8 308 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 BRSK1Q8TDC3 778 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 RNF128Q8TEB7 428 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 DYDC1Q8WWB3 177 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 MAIP1Q8WWC4 291 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 HSD17B8Q92506 261 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 ZNF653Q96CK0 615 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 SENP5Q96HI0 755 aaPredicted RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 LINC00479Q96M42 142 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 JAKMIP1Q96N16 626 aaKnown RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 RBM14Q96PK6 669 aaKnown RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 PSKH2Q96QS6 385 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 SLC22A12Q96S37 553 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 CDRT15Q96T59 188 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 PAFAH2Q99487 392 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 CCT7Q99832 543 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 OPRPNQ99935 248 aaPredicted RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 UQCC2Q9BRT2 126 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 URM1Q9BTM9 101 aaKnown RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 LMF2Q9BU23 707 aaKnown RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 TUBB2BQ9BVA1 445 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 MXD3Q9BW11 206 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 CCSER1Q9C0I3 900 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 MIS12Q9H081 205 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 NSRP1Q9H0G5 558 aaKnown RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 P2RY12Q9H244 342 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 MMP27Q9H306 513 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 RABEP2Q9H5N1 569 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 PELI2Q9HAT8 420 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 PARVGQ9HBI0 331 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 ACKR4Q9NPB9 350 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 PPANQ9NQ55 473 aaKnown RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 HPS4Q9NQG7 708 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 MBNL1Q9NR56 388 aaKnown RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 INIPQ9NRY2 104 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 BLOC1S4Q9NUP1 217 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 ATAD3AQ9NVI7 634 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 C2orf42Q9NWW7 574 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 DPP3Q9NY33 737 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 CLIC5Q9NZA1 410 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 MRPL15Q9P015 296 aaKnown RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 DDX25Q9UHL0 483 aaKnown RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 OSGIN1Q9UJX0 560 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 FBXO2Q9UK22 296 aaPredicted RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 RAB23Q9ULC3 237 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 CCPG1Q9ULG6 757 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 PLAGL1Q9UM63 463 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 PPIEQ9UNP9 301 aaKnown RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 NOSIPQ9Y314 301 aaKnown RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 TENM4Q6N022 2769 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 SPTAN1Q13813 2472 aaKnown RBP1.95□□□□□ -2.1
HMGB1-208ENST00000490788 RFX7Q2KHR2 1363 aa1.95□□□□□ -2.1
HMGB1-208ENST00000490788 GBF1Q92538 1859 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 FBN2P35556 2912 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 DDX60Q8IY21 1712 aaKnown RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 MYO3BQ8WXR4 1341 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 MAPK8IP3Q9UPT6 1336 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 PHIPQ8WWQ0 1821 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 GREB1LQ9C091 1923 aaPredicted RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 IGHV4-4A0A075B6R2 117 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 A0A087WW49 117 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 IGHV4-61A0A0C4DH41 118 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 A0A1W2PN81 502 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 hCG_1807616A0A1W2PRN6 198 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 NDUFAF8A1L188 74 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 MEIOCA2RUB1 952 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 ANKRD61A6NGH8 418 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 TRIM64A6NGJ6 449 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 TRIM64BA6NI03 449 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 CCDC169A6NNP5 214 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 A8MV72 311 aaPredicted RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 LOC730098B7Z3J9 87 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 E9PI62 339 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 GAPDHSO14556 408 aaPredicted RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 MEIS2O14770 477 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 KLF11O14901 512 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 ATP6V0E1O15342 81 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 PI15O43692 258 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 MED24O75448 989 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 STAMBPO95630 424 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 TBX6O95947 436 aaPredicted RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 NGFP01138 241 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 IGHV4-59P01825 116 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 APOEP02649 317 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 TPOP07202 933 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 SP9P0CG40 484 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 FAM157CP0CG43 387 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 TRIM49P0CI25 452 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 TRIM49CP0CI26 452 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 CCDC192P0DO97 292 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 IDO1P14902 403 aa1.94□□□□□ -2.1
HMGB1-208ENST00000490788 ZNF26P17031 533 aaPredicted RBP1.94□□□□□ -2.1
HMGB1-208ENST00000490788 AOC1P19801 751 aa1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms