RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 CRB2Q5IJ48 1285 aa17.04■□□□□ 0.32
COL9A3-214ENST00000490398 ADGRD1Q6QNK2 874 aa17.04■□□□□ 0.32
COL9A3-214ENST00000490398 ZNF793Q6ZN11 406 aa17.04■□□□□ 0.32
COL9A3-214ENST00000490398 GOLGA7Q7Z5G4 137 aa17.04■□□□□ 0.32
COL9A3-214ENST00000490398 LAS2Q8IYD9 372 aa17.04■□□□□ 0.32
COL9A3-214ENST00000490398 TMEM151AQ8N4L1 468 aa17.04■□□□□ 0.32
COL9A3-214ENST00000490398 ZADH2Q8N4Q0 377 aa17.04■□□□□ 0.32
COL9A3-214ENST00000490398 CISD2Q8N5K1 135 aaKnown RBP17.04■□□□□ 0.32
COL9A3-214ENST00000490398 TTLQ8NG68 377 aa17.04■□□□□ 0.32
COL9A3-214ENST00000490398 OR2L5Q8NG80 312 aa17.04■□□□□ 0.32
COL9A3-214ENST00000490398 PHF21BQ96EK2 531 aa17.04■□□□□ 0.32
COL9A3-214ENST00000490398 TUBB6Q9BUF5 446 aa17.04■□□□□ 0.32
COL9A3-214ENST00000490398 PITHD1Q9GZP4 211 aaPredicted RBP17.04■□□□□ 0.32
COL9A3-214ENST00000490398 REXO4Q9GZR2 422 aaKnown RBP17.04■□□□□ 0.32
COL9A3-214ENST00000490398 CLMPQ9H6B4 373 aa17.04■□□□□ 0.32
COL9A3-214ENST00000490398 PRDM7Q9NQW5 492 aa17.04■□□□□ 0.32
COL9A3-214ENST00000490398 URADA6NGE7 173 aa17.03■□□□□ 0.32
COL9A3-214ENST00000490398 SNRPAP09012 282 aaKnown RBP17.03■□□□□ 0.32
COL9A3-214ENST00000490398 PCNAP12004 261 aa17.03■□□□□ 0.32
COL9A3-214ENST00000490398 EPB42P16452 691 aa17.03■□□□□ 0.32
COL9A3-214ENST00000490398 IL10P22301 178 aa17.03■□□□□ 0.32
COL9A3-214ENST00000490398 MFAP5Q13361 173 aa17.03■□□□□ 0.32
COL9A3-214ENST00000490398 LAPTM5Q13571 262 aa17.03■□□□□ 0.32
COL9A3-214ENST00000490398 PCBP2Q15366 365 aaKnown RBP eCLIP17.03■□□□□ 0.32
COL9A3-214ENST00000490398 IRAK1BP1Q5VVH5 260 aa17.03■□□□□ 0.32
COL9A3-214ENST00000490398 FCRLBQ6BAA4 426 aa17.03■□□□□ 0.32
COL9A3-214ENST00000490398 GRHL2Q6ISB3 625 aa17.03■□□□□ 0.32
COL9A3-214ENST00000490398 KLC3Q6P597 504 aa17.03■□□□□ 0.32
COL9A3-214ENST00000490398 PAPD4Q6PIY7 484 aaKnown RBP17.03■□□□□ 0.32
COL9A3-214ENST00000490398 ISLR2Q6UXK2 745 aa17.03■□□□□ 0.32
COL9A3-214ENST00000490398 RPS27LQ71UM5 84 aaKnown RBP17.03■□□□□ 0.32
COL9A3-214ENST00000490398 OR7G3Q8NG95 312 aa17.03■□□□□ 0.32
COL9A3-214ENST00000490398 SNRNP40Q96DI7 357 aaKnown RBP17.03■□□□□ 0.32
COL9A3-214ENST00000490398 SCYL1Q96KG9 808 aa17.03■□□□□ 0.32
COL9A3-214ENST00000490398 MAGEB10Q96LZ2 347 aaPredicted RBP17.03■□□□□ 0.32
COL9A3-214ENST00000490398 PTCHD1Q96NR3 888 aa17.03■□□□□ 0.32
COL9A3-214ENST00000490398 NSUN5Q96P11 429 aaKnown RBP17.03■□□□□ 0.32
COL9A3-214ENST00000490398 CSF3RQ99062 836 aa17.03■□□□□ 0.32
COL9A3-214ENST00000490398 NPAS2Q99743 824 aa17.03■□□□□ 0.32
COL9A3-214ENST00000490398 SORBS1Q9BX66 1292 aaKnown RBP17.03■□□□□ 0.32
COL9A3-214ENST00000490398 MS4A8Q9BY19 250 aa17.03■□□□□ 0.32
COL9A3-214ENST00000490398 PCDHGA10Q9Y5H3 936 aa17.03■□□□□ 0.32
COL9A3-214ENST00000490398 CLDN16Q9Y5I7 305 aa17.03■□□□□ 0.32
COL9A3-214ENST00000490398 ASH1LQ9NR48 2969 aaKnown RBP17.03■□□□□ 0.32
COL9A3-214ENST00000490398 IGKV3D-11A0A0A0MRZ8 115 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 SAP18O00422 153 aaKnown RBP17.02■□□□□ 0.32
COL9A3-214ENST00000490398 E2F3O00716 465 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 OR7A17O14581 309 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 PCDH17O14917 1159 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 MAN1A2O60476 641 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 TGFB1P01137 390 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 SHBGP04278 402 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 CYC1P08574 325 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 RNH1P13489 461 aaKnown RBP17.02■□□□□ 0.32
COL9A3-214ENST00000490398 CNTFP26441 200 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 GSTM2P28161 218 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 EEF1DP29692 281 aaKnown RBP17.02■□□□□ 0.32
COL9A3-214ENST00000490398 OR4D2P58180 307 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 SRSF1Q07955 248 aaKnown RBP eCLIP17.02■□□□□ 0.32
COL9A3-214ENST00000490398 GTF2H2Q13888 395 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 HIST2H2ACQ16777 129 aaPredicted RBP17.02■□□□□ 0.32
COL9A3-214ENST00000490398 BTBD16Q32M84 506 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 PAGE2BQ5JRK9 111 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 HIST2H2AA3Q6FI13 130 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 GTF2H2CQ6P1K8 395 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 MED27Q6P2C8 311 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 TAOK1Q7L7X3 1001 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 FAM47BQ8NA70 645 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 DNAJB14Q8TBM8 379 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 PPP4R1Q8TF05 950 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 MZB1Q8WU39 189 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 SEC16BQ96JE7 1060 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 FAR2Q96K12 515 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 CNDP1Q96KN2 507 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 CDK15Q96Q40 435 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 ILKAPQ9H0C8 392 aaPredicted RBP17.02■□□□□ 0.32
COL9A3-214ENST00000490398 C19orf25Q9UFG5 118 aaPredicted RBP17.02■□□□□ 0.32
COL9A3-214ENST00000490398 RNF11Q9Y3C5 154 aa17.02■□□□□ 0.32
COL9A3-214ENST00000490398 A0A1B0GTL3 188 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 MYOCOSA0A1B0GUC4 107 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 CCDC189A1A4V9 331 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 A8MUA0 341 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 A8MUI8 341 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 KLHL41O60662 606 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 PRMT3O60678 531 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 GNLYP22749 145 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 PPP2R1BP30154 601 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 PIK3CGP48736 1102 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 SKP1P63208 163 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 DDX39BQ13838 428 aaKnown RBP17.01■□□□□ 0.31
COL9A3-214ENST00000490398 PLAG1Q6DJT9 500 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 NIPAL1Q6NVV3 410 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 TIFABQ6ZNK6 161 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 QSOX2Q6ZRP7 698 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 RIPOR1Q6ZS17 1223 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 MYLK4Q86YV6 388 aaPredicted RBP17.01■□□□□ 0.31
COL9A3-214ENST00000490398 KIF2BQ8N4N8 673 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 OR52B6Q8NGF0 335 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 HUS1BQ8NHY5 278 aa17.01■□□□□ 0.31
COL9A3-214ENST00000490398 TM9SF4Q92544 642 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms