RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 KLRB1Q12918 225 aa16.36■□□□□ 0.21
MDC1-206ENST00000489540 CPSF6Q16630 551 aaKnown RBP eCLIP16.36■□□□□ 0.21
MDC1-206ENST00000489540 PTRH1Q86Y79 214 aaKnown RBP16.36■□□□□ 0.21
MDC1-206ENST00000489540 SLC22A9Q8IVM8 553 aa16.36■□□□□ 0.21
MDC1-206ENST00000489540 PARP9Q8IXQ6 854 aa16.36■□□□□ 0.21
MDC1-206ENST00000489540 SHISA5Q8N114 240 aa16.36■□□□□ 0.21
MDC1-206ENST00000489540 CA13Q8N1Q1 262 aa16.36■□□□□ 0.21
MDC1-206ENST00000489540 RIBC1Q8N443 379 aaPredicted RBP16.36■□□□□ 0.21
MDC1-206ENST00000489540 TEX19Q8NA77 164 aa16.36■□□□□ 0.21
MDC1-206ENST00000489540 HUS1BQ8NHY5 278 aa16.36■□□□□ 0.21
MDC1-206ENST00000489540 MAGEB10Q96LZ2 347 aaPredicted RBP16.36■□□□□ 0.21
MDC1-206ENST00000489540 QRFPRQ96P65 431 aa16.36■□□□□ 0.21
MDC1-206ENST00000489540 KCNC2Q96PR1 638 aa16.36■□□□□ 0.21
MDC1-206ENST00000489540 SERINC2Q96SA4 455 aa16.36■□□□□ 0.21
MDC1-206ENST00000489540 CENPKQ9BS16 269 aa16.36■□□□□ 0.21
MDC1-206ENST00000489540 TBCDQ9BTW9 1192 aa16.36■□□□□ 0.21
MDC1-206ENST00000489540 MS4A8Q9BY19 250 aa16.36■□□□□ 0.21
MDC1-206ENST00000489540 ROPN1BQ9BZX4 212 aaPredicted RBP16.36■□□□□ 0.21
MDC1-206ENST00000489540 ZNF700Q9H0M5 742 aa16.36■□□□□ 0.21
MDC1-206ENST00000489540 ROPN1Q9HAT0 212 aaPredicted RBP16.36■□□□□ 0.21
MDC1-206ENST00000489540 ZNF160Q9HCG1 818 aa16.36■□□□□ 0.21
MDC1-206ENST00000489540 RIC8BQ9NVN3 520 aa16.36■□□□□ 0.21
MDC1-206ENST00000489540 PSD3Q9NYI0 1048 aa16.36■□□□□ 0.21
MDC1-206ENST00000489540 ANAPC2Q9UJX6 822 aa16.36■□□□□ 0.21
MDC1-206ENST00000489540 GRID1Q9ULK0 1009 aa16.36■□□□□ 0.21
MDC1-206ENST00000489540 RNF11Q9Y3C5 154 aa16.36■□□□□ 0.21
MDC1-206ENST00000489540 ATMQ13315 3056 aa16.35■□□□□ 0.21
MDC1-206ENST00000489540 MAGEB17A8MXT2 336 aa16.35■□□□□ 0.21
MDC1-206ENST00000489540 MASP2O00187 686 aa16.35■□□□□ 0.21
MDC1-206ENST00000489540 OR7A17O14581 309 aa16.35■□□□□ 0.21
MDC1-206ENST00000489540 GLRA3O75311 464 aa16.35■□□□□ 0.21
MDC1-206ENST00000489540 TGFB1P01137 390 aa16.35■□□□□ 0.21
MDC1-206ENST00000489540 PDGFAP04085 211 aa16.35■□□□□ 0.21
MDC1-206ENST00000489540 RPS17P08708 135 aaKnown RBP16.35■□□□□ 0.21
MDC1-206ENST00000489540 PTX3P26022 381 aaPredicted RBP16.35■□□□□ 0.21
MDC1-206ENST00000489540 ARL1P40616 181 aaPredicted RBP16.35■□□□□ 0.21
MDC1-206ENST00000489540 AP2B1P63010 937 aa16.35■□□□□ 0.21
MDC1-206ENST00000489540 HERVK_113P63132 956 aa16.35■□□□□ 0.21
MDC1-206ENST00000489540 RHAGQ02094 409 aa16.35■□□□□ 0.21
MDC1-206ENST00000489540 RCN2Q14257 317 aa16.35■□□□□ 0.21
MDC1-206ENST00000489540 NSDHLQ15738 373 aa16.35■□□□□ 0.21
MDC1-206ENST00000489540 DEPDC1Q5TB30 811 aa16.35■□□□□ 0.21
MDC1-206ENST00000489540 CPEB2Q7Z5Q1 589 aaKnown RBP16.35■□□□□ 0.21
MDC1-206ENST00000489540 MILR1Q7Z6M3 343 aa16.35■□□□□ 0.21
MDC1-206ENST00000489540 KBTBD2Q8IY47 623 aa16.35■□□□□ 0.21
MDC1-206ENST00000489540 ADAMTS18Q8TE60 1221 aa16.35■□□□□ 0.21
MDC1-206ENST00000489540 PPP4R1Q8TF05 950 aa16.35■□□□□ 0.21
MDC1-206ENST00000489540 ZNF483Q8TF39 744 aaPredicted RBP16.35■□□□□ 0.21
MDC1-206ENST00000489540 MESP1Q9BRJ9 268 aa16.35■□□□□ 0.21
MDC1-206ENST00000489540 TUBB6Q9BUF5 446 aa16.35■□□□□ 0.21
MDC1-206ENST00000489540 ERVK-6Q9BXR3 956 aa16.35■□□□□ 0.21
MDC1-206ENST00000489540 LHPPQ9H008 270 aa16.35■□□□□ 0.21
MDC1-206ENST00000489540 ZNF552Q9H707 407 aaPredicted RBP16.35■□□□□ 0.21
MDC1-206ENST00000489540 COPS7BQ9H9Q2 264 aaPredicted RBP16.35■□□□□ 0.21
MDC1-206ENST00000489540 ZBTB26Q9HCK0 441 aa16.35■□□□□ 0.21
MDC1-206ENST00000489540 RAB21Q9UL25 225 aa16.35■□□□□ 0.21
MDC1-206ENST00000489540 SPTA1P02549 2419 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 A0A0G2JN53 185 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 SUV39H1O43463 412 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 DLX3O60479 287 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 PRMT3O60678 531 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 DPM1O60762 260 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 B4GALT2O60909 372 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 CDC123O75794 336 aaPredicted RBP16.34■□□□□ 0.21
MDC1-206ENST00000489540 OTCP00480 354 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 NR1D1P20393 614 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 IMPDH1P20839 514 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 CRHR1P34998 444 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 EFNA3P52797 238 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 PRKAA2P54646 552 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 EEF1A2Q05639 463 aaKnown RBP16.34■□□□□ 0.21
MDC1-206ENST00000489540 RAPSNQ13702 412 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 RUNX2Q13950 521 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 ABRAXAS2Q15018 415 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 PCOLCEQ15113 449 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 ZRSR2Q15696 482 aaKnown RBP16.34■□□□□ 0.21
MDC1-206ENST00000489540 C10orf62Q5T681 223 aaPredicted RBP16.34■□□□□ 0.21
MDC1-206ENST00000489540 KHDRBS2Q5VWX1 349 aaKnown RBP16.34■□□□□ 0.21
MDC1-206ENST00000489540 QSOX2Q6ZRP7 698 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 ANKRD37Q7Z713 158 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 MREGQ8N565 214 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 OR52B6Q8NGF0 335 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 OR2W6PQ8NHA6 318 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 CCDC126Q96EE4 140 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 THOC3Q96J01 351 aaKnown RBP16.34■□□□□ 0.21
MDC1-206ENST00000489540 NSUN5Q96P11 429 aaKnown RBP16.34■□□□□ 0.21
MDC1-206ENST00000489540 RBCK1Q9BYM8 510 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 SEMA4BQ9NPR2 832 aaPredicted RBP16.34■□□□□ 0.21
MDC1-206ENST00000489540 PRDM7Q9NQW5 492 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 COL6A6A6NMZ7 2263 aa16.34■□□□□ 0.21
MDC1-206ENST00000489540 OR2W5A6NFC9 320 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 FOXE1O00358 373 aaPredicted RBP16.33■□□□□ 0.2
MDC1-206ENST00000489540 CLDN4O14493 209 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 SERPINA7P05543 415 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 KRT4P19013 534 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 TSFMP43897 325 aaKnown RBP16.33■□□□□ 0.2
MDC1-206ENST00000489540 ARFIP1P53367 373 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 RAB38P57729 211 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 Q0VFX4 171 aa16.33■□□□□ 0.2
MDC1-206ENST00000489540 DDX39BQ13838 428 aaKnown RBP16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms