RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 C1GALT1Q9NS00 363 aa17.2■□□□□ 0.34
VIM-206ENST00000487938 RHCGQ9UBD6 479 aa17.2■□□□□ 0.34
VIM-206ENST00000487938 HELZP42694 1942 aaKnown RBP17.2■□□□□ 0.34
VIM-206ENST00000487938 PIPSLA2A3N6 862 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 CLCA1A8K7I4 914 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 KPNA3O00505 521 aaPredicted RBP17.19■□□□□ 0.34
VIM-206ENST00000487938 CDK1P06493 297 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 CSF2RAP15509 400 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 ITGB8P26012 769 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 SOAT1P35610 550 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 MMP12P39900 470 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 MNX1P50219 401 aaPredicted RBP17.19■□□□□ 0.34
VIM-206ENST00000487938 CRISP3P54108 245 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 CYP4F2P78329 520 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 DMC1Q14565 340 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 INAVAQ3KP66 663 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 SOWAHCQ53LP3 525 aaPredicted RBP17.19■□□□□ 0.34
VIM-206ENST00000487938 PARS2Q7L3T8 475 aaKnown RBP17.19■□□□□ 0.34
VIM-206ENST00000487938 ZNF605Q86T29 641 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 TRAPPC5Q8IUR0 188 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 KLHL23Q8NBE8 558 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 VN1R2Q8NFZ6 395 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 GOT1L1Q8NHS2 421 aaPredicted RBP17.19■□□□□ 0.34
VIM-206ENST00000487938 PSMA8Q8TAA3 256 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 MYDGFQ969H8 173 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 GTPBP3Q969Y2 492 aaKnown RBP17.19■□□□□ 0.34
VIM-206ENST00000487938 REPS1Q96D71 796 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 RNF167Q9H6Y7 350 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 ATAD3AQ9NVI7 634 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 PRAMEF33A0A0G2JMD5 474 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 PRAMEF10O60809 474 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 GPR37L1O60883 481 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 ADH1AP07327 375 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 ANXA8P13928 327 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 TGM1P22735 817 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 GRK5P34947 590 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 PPM1AP35813 382 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 DGKEP52429 567 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 NTHL1P78549 312 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 CDK6Q00534 326 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 TRMT11Q7Z4G4 463 aaKnown RBP17.19■□□□□ 0.34
VIM-206ENST00000487938 ZSWIM3Q96MP5 696 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 DACH2Q96NX9 599 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 EPS8L2Q9H6S3 715 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 INIPQ9NRY2 104 aa17.19■□□□□ 0.34
VIM-206ENST00000487938 TSPAN11A1L157 253 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 HIDE1A8MVS5 230 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 DBTP11182 482 aaKnown RBP17.18■□□□□ 0.34
VIM-206ENST00000487938 DSG4Q86SJ6 1040 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 SLC22A16Q86VW1 577 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 NLGN4XQ8N0W4 816 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 CADM3Q8N126 398 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 PLCXD1Q9NUJ7 323 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 SAGE1Q9NXZ1 904 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 RAB23Q9ULC3 237 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 POFUT2Q9Y2G5 429 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 LOC100506127A0A0U1RQW1 187 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 FOXE1O00358 373 aaPredicted RBP17.18■□□□□ 0.34
VIM-206ENST00000487938 CTSKP43235 329 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 ERVFC1P60507 584 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 TAP2Q03519 686 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 E2F2Q14209 437 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 HIST2H2AA3Q6FI13 130 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 FAM71E1Q6IPT2 247 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 ERAP2Q6P179 960 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 NLRP8Q86W28 1048 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 LAS2Q8IYD9 372 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 STX19Q8N4C7 294 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 OR9A1PQ8NGU1 263 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 ZNF675Q8TD23 568 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 CXorf40BQ96DE9 158 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 IL17FQ96PD4 163 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 EHD1Q9H4M9 534 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 ACER3Q9NUN7 267 aa17.18■□□□□ 0.34
VIM-206ENST00000487938 NFKBIL1Q9UBC1 381 aaPredicted RBP17.18■□□□□ 0.34
VIM-206ENST00000487938 A0A1W2PRB8 838 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 PLK4O00444 970 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 IL3P08700 152 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 EEF1A2Q05639 463 aaKnown RBP17.17■□□□□ 0.34
VIM-206ENST00000487938 LRRC74AQ0VAA2 488 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 ST3GAL4Q11206 333 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 ZNF658BQ4V348 819 aaPredicted RBP17.17■□□□□ 0.34
VIM-206ENST00000487938 TRIM40Q6P9F5 258 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 KIAA0907Q7Z7F0 614 aaPredicted RBP17.17■□□□□ 0.34
VIM-206ENST00000487938 FCGR1BQ92637 280 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 NRTNQ99748 197 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 C6orf62Q9GZU0 229 aaPredicted RBP17.17■□□□□ 0.34
VIM-206ENST00000487938 OR51E2Q9H255 320 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 ABCB10Q9NRK6 738 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 MS4A12Q9NXJ0 267 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 TAS2R9Q9NYW1 312 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 PLAGL1Q9UM63 463 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 DUSP12Q9UNI6 340 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 SNX8Q9Y5X2 465 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 TLL1O43897 1013 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 SOD1P00441 154 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 PTHP01270 115 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 HSMCR30P0CW71 290 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 IRS1P35568 1242 aa17.17■□□□□ 0.34
VIM-206ENST00000487938 PPP5CP53041 499 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms