RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 PRTGQ2VWP7 1150 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 SGO1Q5FBB7 561 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 VWA2Q5GFL6 755 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 CEP85LQ5SZL2 805 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 LIPJQ5W064 366 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 METTL2BQ6P1Q9 378 aaKnown RBP7.62□□□□□ -1.19
USP40-216ENST00000485943 FAM198BQ6UWH4 519 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 TIFABQ6ZNK6 161 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 GOLGA7Q7Z5G4 137 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 SRRM1Q8IYB3 904 aaKnown RBP7.62□□□□□ -1.19
USP40-216ENST00000485943 LRRC56Q8IYG6 542 aaPredicted RBP7.62□□□□□ -1.19
USP40-216ENST00000485943 CENPLQ8N0S6 344 aaPredicted RBP7.62□□□□□ -1.19
USP40-216ENST00000485943 C4orf33Q8N1A6 199 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 AFAP1L2Q8N4X5 818 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 SLC38A9Q8NBW4 561 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 KCT2Q8NC54 265 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 OR51Q1Q8NH59 317 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 SUN3Q8TAQ9 357 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 ZDHHC19Q8WVZ1 309 aaPredicted RBP7.62□□□□□ -1.19
USP40-216ENST00000485943 SELENOMQ8WWX9 145 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 MTFMTQ96DP5 389 aaKnown RBP7.62□□□□□ -1.19
USP40-216ENST00000485943 FRMD6Q96NE9 622 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 KCNC2Q96PR1 638 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 OR4K3Q96R72 315 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 ATOH8Q96SQ7 321 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 TMEM79Q9BSE2 394 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 ACBD3Q9H3P7 528 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 EPS8L2Q9H6S3 715 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 NPHS2Q9NP85 383 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 KCNK9Q9NPC2 374 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 RIC8BQ9NVN3 520 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 GEMIN8Q9NWZ8 242 aaKnown RBP7.62□□□□□ -1.19
USP40-216ENST00000485943 GPR83Q9NYM4 423 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 SENP1Q9P0U3 644 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 CTSFQ9UBX1 484 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 VTI1BQ9UEU0 232 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 TEKT2Q9UIF3 430 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 IKZF3Q9UKT9 509 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 SLC22A7Q9Y694 548 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 SCN2AQ99250 2005 aa7.62□□□□□ -1.19
USP40-216ENST00000485943 A0A0G2JN53 185 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 SYNDIG1LA6NDD5 238 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 IDSB3KWA1 339 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 AGPSO00116 658 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 TAPBPO15533 448 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 P2RX6O15547 441 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 HCRTR1O43613 425 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 LCMT2O60294 686 aaKnown RBP7.61□□□□□ -1.19
USP40-216ENST00000485943 UGDHO60701 494 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 B4GALT2O60909 372 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 GUCY1B2O75343 617 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 SIX3O95343 332 aaPredicted RBP7.61□□□□□ -1.19
USP40-216ENST00000485943 TGFB1P01137 390 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 KRT6AP02538 564 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 KRT6BP04259 564 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 SHBGP04278 402 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 IFNA16P05015 189 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 CTSBP07858 339 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 COX7A2P14406 83 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 TNNI3P19429 210 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 CD33P20138 364 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 F8A1P23610 371 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 MMP11P24347 488 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 GGT5P36269 586 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 GMPRP36959 345 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 BUD31P41223 144 aaPredicted RBP7.61□□□□□ -1.19
USP40-216ENST00000485943 SLC6A12P48065 614 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 KRT6CP48668 564 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 MTTPP55157 894 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 KLC1Q07866 573 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 STX4Q12846 297 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 DLG1Q12959 904 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 CHAF1BQ13112 559 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 AIMP2Q13155 320 aaKnown RBP7.61□□□□□ -1.19
USP40-216ENST00000485943 RAPSNQ13702 412 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 RASA2Q15283 850 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 PCBP2Q15366 365 aaKnown RBP eCLIP7.61□□□□□ -1.19
USP40-216ENST00000485943 NSDHLQ15738 373 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 NKG7Q16617 165 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 GRHL2Q6ISB3 625 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 SLCO4C1Q6ZQN7 724 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 PAGE2Q7Z2X7 111 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 MRGPREQ86SM8 312 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 KLHDC8AQ8IYD2 350 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 PLD6Q8N2A8 252 aaKnown RBP7.61□□□□□ -1.19
USP40-216ENST00000485943 LSM14AQ8ND56 463 aaKnown RBP7.61□□□□□ -1.19
USP40-216ENST00000485943 ZNF740Q8NDX6 193 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 C7orf57Q8NEG2 295 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 OR2W6PQ8NHA6 318 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 RDH11Q8TC12 318 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 NT5CQ8TCD5 201 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 UBTD2Q8WUN7 234 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 CAVIN3Q969G5 261 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 GTPBP3Q969Y2 492 aaKnown RBP7.61□□□□□ -1.19
USP40-216ENST00000485943 RGMAQ96B86 450 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 NACC2Q96BF6 587 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 TBC1D20Q96BZ9 403 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 WBP1Q96G27 269 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 C10orf90Q96M02 699 aa7.61□□□□□ -1.19
USP40-216ENST00000485943 PTCHD1Q96NR3 888 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms