RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 FAM167BQ9BTA0 163 aa12.16□□□□□ -0.46
HDAC6-227ENST00000485102 RBCK1Q9BYM8 510 aa12.16□□□□□ -0.46
HDAC6-227ENST00000485102 DEFB126Q9BYW3 111 aa12.16□□□□□ -0.46
HDAC6-227ENST00000485102 SLC6A16Q9GZN6 736 aa12.16□□□□□ -0.46
HDAC6-227ENST00000485102 TP63Q9H3D4 680 aaPredicted RBP12.16□□□□□ -0.46
HDAC6-227ENST00000485102 NPDC1Q9NQX5 325 aaPredicted RBP12.16□□□□□ -0.46
HDAC6-227ENST00000485102 KCNN3Q9UGI6 736 aa12.16□□□□□ -0.46
HDAC6-227ENST00000485102 NEU2Q9Y3R4 380 aa12.16□□□□□ -0.46
HDAC6-227ENST00000485102 MMACHCQ9Y4U1 282 aa12.16□□□□□ -0.46
HDAC6-227ENST00000485102 ACANP16112 2415 aa12.16□□□□□ -0.46
HDAC6-227ENST00000485102 FAM221AA4D161 298 aa12.15□□□□□ -0.46
HDAC6-227ENST00000485102 B4GALT2O60909 372 aa12.15□□□□□ -0.46
HDAC6-227ENST00000485102 TPOP07202 933 aa12.15□□□□□ -0.46
HDAC6-227ENST00000485102 F7P08709 466 aaPredicted RBP12.15□□□□□ -0.46
HDAC6-227ENST00000485102 HOXD4P09016 255 aaPredicted RBP12.15□□□□□ -0.46
HDAC6-227ENST00000485102 RNH1P13489 461 aaKnown RBP12.15□□□□□ -0.46
HDAC6-227ENST00000485102 MSX1P28360 303 aa12.15□□□□□ -0.46
HDAC6-227ENST00000485102 GABRB3P28472 473 aa12.15□□□□□ -0.46
HDAC6-227ENST00000485102 CLCN2P51788 898 aa12.15□□□□□ -0.46
HDAC6-227ENST00000485102 GPR143P51810 404 aa12.15□□□□□ -0.46
HDAC6-227ENST00000485102 TRIP13Q15645 432 aaPredicted RBP12.15□□□□□ -0.46
HDAC6-227ENST00000485102 PAQR3Q6TCH7 311 aa12.15□□□□□ -0.46
HDAC6-227ENST00000485102 GALNT7Q86SF2 657 aa12.15□□□□□ -0.46
HDAC6-227ENST00000485102 AGGF1Q8N302 714 aaeCLIP12.15□□□□□ -0.46
HDAC6-227ENST00000485102 GPATCH11Q8N954 259 aa12.15□□□□□ -0.46
HDAC6-227ENST00000485102 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.15□□□□□ -0.46
HDAC6-227ENST00000485102 BBOF1Q8ND07 529 aa12.15□□□□□ -0.46
HDAC6-227ENST00000485102 ARMC2Q8NEN0 867 aa12.15□□□□□ -0.46
HDAC6-227ENST00000485102 TRPV3Q8NET8 790 aa12.15□□□□□ -0.46
HDAC6-227ENST00000485102 B3GNT7Q8NFL0 401 aa12.15□□□□□ -0.46
HDAC6-227ENST00000485102 GABPB2Q8TAK5 448 aaPredicted RBP12.15□□□□□ -0.46
HDAC6-227ENST00000485102 ATL1Q8WXF7 558 aa12.15□□□□□ -0.46
HDAC6-227ENST00000485102 RND1Q92730 232 aa12.15□□□□□ -0.46
HDAC6-227ENST00000485102 FBXL8Q96CD0 374 aa12.15□□□□□ -0.46
HDAC6-227ENST00000485102 KCNJ16Q9NPI9 418 aa12.15□□□□□ -0.46
HDAC6-227ENST00000485102 ZFATQ9P243 1243 aa12.15□□□□□ -0.46
HDAC6-227ENST00000485102 RNF6Q9Y252 685 aa12.15□□□□□ -0.46
HDAC6-227ENST00000485102 SYNDIG1LA6NDD5 238 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 HS6ST1O60243 411 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 SERPINA6P08185 405 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 ENO2P09104 434 aaPredicted RBP12.14□□□□□ -0.47
HDAC6-227ENST00000485102 ZNF888P0CJ79 500 aaPredicted RBP12.14□□□□□ -0.47
HDAC6-227ENST00000485102 VPS41P49754 854 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 IL2P60568 153 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 OLR1P78380 273 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 HYAL2Q12891 473 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 CSHL1Q14406 222 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 PPP1R7Q15435 360 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 EMC4Q5J8M3 183 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 CATSPEREQ5SY80 951 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 PAOXQ6QHF9 649 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 RGS9BPQ6ZS82 235 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 ACAD11Q709F0 780 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 ZNF572Q7Z3I7 529 aaPredicted RBP12.14□□□□□ -0.47
HDAC6-227ENST00000485102 CNTN4Q8IWV2 1026 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 GPALPP1Q8IXQ4 340 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 CYP4X1Q8N118 509 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 CYP4Z2PQ8N1L4 340 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 C17orf53Q8N3J3 647 aaPredicted RBP12.14□□□□□ -0.47
HDAC6-227ENST00000485102 NAT8LQ8N9F0 302 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 SLC5A11Q8WWX8 675 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 NEIL2Q969S2 332 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 PDLIM5Q96HC4 596 aaKnown RBP12.14□□□□□ -0.47
HDAC6-227ENST00000485102 CAPZA3Q96KX2 299 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 TRIM54Q9BYV2 358 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 NECTIN3Q9NQS3 549 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 ARL15Q9NXU5 204 aa12.14□□□□□ -0.47
HDAC6-227ENST00000485102 YARS2Q9Y2Z4 477 aaKnown RBP12.14□□□□□ -0.47
HDAC6-227ENST00000485102 ANKHD1Q8IWZ3 2542 aaKnown RBP12.14□□□□□ -0.47
HDAC6-227ENST00000485102 ABCA2Q9BZC7 2435 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 FAM187AA6NFU0 413 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 PSMD12O00232 456 aaPredicted RBP12.13□□□□□ -0.47
HDAC6-227ENST00000485102 ITGA10O75578 1167 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 B3GALT4O96024 378 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 AHSGP02765 367 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 MAOAP21397 527 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 REEP5Q00765 189 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 GLE1Q53GS7 698 aaKnown RBP12.13□□□□□ -0.47
HDAC6-227ENST00000485102 TTC27Q6P3X3 843 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 CEP128Q6ZU80 1094 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 MDGA2Q7Z553 956 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 SCUBE1Q8IWY4 988 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 TMEM156Q8N614 296 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 ANKRD53Q8N9V6 530 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 CREB3L4Q8TEY5 395 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 ALKBH8Q96BT7 664 aaKnown RBP12.13□□□□□ -0.47
HDAC6-227ENST00000485102 PYCR2Q96C36 320 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 LINGO1Q96FE5 620 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 VMP1Q96GC9 406 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 POM121Q96HA1 1249 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 MS4A14Q96JA4 679 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 NDNQ99608 321 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 NPLQ9BXD5 320 aaPredicted RBP12.13□□□□□ -0.47
HDAC6-227ENST00000485102 RAB17Q9H0T7 212 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 CXXC4Q9H2H0 198 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 SPNS1Q9H2V7 528 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 ZDHHC11Q9H8X9 412 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 PELI2Q9HAT8 420 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 TIMMDC1Q9NPL8 285 aa12.13□□□□□ -0.47
HDAC6-227ENST00000485102 IARS2Q9NSE4 1012 aaKnown RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms