RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 RBBP8Q99708 897 aa17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 ERP44Q9BS26 406 aa17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 TSPAN10Q9H1Z9 355 aaPredicted RBP17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 CDCP1Q9H5V8 836 aa17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 ENTPD4Q9Y227 616 aa17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 CLDN16Q9Y5I7 305 aa17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 CACNA1CQ13936 2221 aa17.59■□□□□ 0.41
CCDC88B-206ENST00000473405 AKAP9Q99996 3911 aa17.58■□□□□ 0.41
CCDC88B-206ENST00000473405 TEP1Q99973 2627 aaKnown RBP17.58■□□□□ 0.41
CCDC88B-206ENST00000473405 A0A0G2JN53 185 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 LRIT2A6NDA9 550 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 FAM159BA6NKW6 160 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 TGFBR3LH3BV60 316 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 RAD51CO43502 376 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 SLC19A2O60779 497 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 CCDC166P0CW27 439 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 CD46P15529 392 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 SLC12A2P55011 1212 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 STXBP1P61764 594 aaKnown RBP17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 BTN3A2P78410 334 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 OC90Q02509 493 aaPredicted RBP17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 GTF3C1Q12789 2109 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 RUNX2Q13950 521 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 ZKSCAN8Q15776 578 aaPredicted RBP17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 FBXO48Q5FWF7 155 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 GALNTL5Q7Z4T8 443 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 SIAH3Q8IW03 269 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 SCUBE1Q8IWY4 988 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 SLC34A3Q8N130 599 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 TMEM178AQ8NBL3 297 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 APCDD1LQ8NCL9 501 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 TMEM52Q8NDY8 209 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 SPATA4Q8NEY3 305 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 TTLQ8NG68 377 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 THAP3Q8WTV1 239 aaPredicted RBP17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 GPR137Q96N19 417 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 QRFPRQ96P65 431 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 LRFN1Q9P244 771 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 SH3BGRL2Q9UJC5 107 aa17.58■□□□□ 0.4
CCDC88B-206ENST00000473405 FAM187AA6NFU0 413 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 A8MUA0 341 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 CCL21O00585 134 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 CDK2AP1O14519 115 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 EIF3HO15372 352 aaKnown RBP eCLIP17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 ERI3O43414 337 aaKnown RBP17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 NME2P1O60361 137 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 SLC25A12O75746 678 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 SP1P08047 785 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 CD1DP15813 335 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 NME2P22392 152 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 GSTM2P28161 218 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 HNRNPFP52597 415 aaKnown RBP17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 MLF1P58340 268 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 RBPJQ06330 500 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 CALCOCO2Q13137 446 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 ADPRMQ3LIE5 342 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 GPSM1Q86YR5 675 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 HORMAD2Q8N7B1 307 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 TSPAN17Q96FV3 270 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 SEC16BQ96JE7 1060 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 UBXN10Q96LJ8 280 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 CPNE1Q99829 537 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 EHD1Q9H4M9 534 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 NT5DC2Q9H857 520 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 TRIM45Q9H8W5 580 aaPredicted RBP17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 WWOXQ9NZC7 414 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 GPRC5BQ9NZH0 403 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 MMACHCQ9Y4U1 282 aa17.57■□□□□ 0.4
CCDC88B-206ENST00000473405 PKDREJQ9NTG1 2253 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 PRSS44E7EML9 344 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 CLEC3AO75596 197 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 PRF1P14222 555 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 EPORP19235 508 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 CD22P20273 847 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 GRNP28799 593 aaKnown RBP17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 PPP2R1BP30154 601 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 TRHRP34981 398 aaPredicted RBP17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 GMPRP36959 345 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 HSPA7P48741 367 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 GPX6P59796 221 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 ALDH6A1Q02252 535 aaKnown RBP17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 C2orf54Q08AI8 447 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 TERF2Q15554 542 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 RNFT1Q5M7Z0 435 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 CDKL4Q5MAI5 379 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 SLC25A25Q6KCM7 469 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 CYS1Q717R9 158 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 PNPLA5Q7Z6Z6 429 aaPredicted RBP17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 TCAIMQ8N3R3 496 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 PDPRQ8NCN5 879 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 ARMC2Q8NEN0 867 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 CCT6BQ92526 530 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 CDKL2Q92772 493 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 MARVELD3Q96A59 401 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 ESAMQ96AP7 390 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 WDR34Q96EX3 536 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 FAR2Q96K12 515 aa17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 NPLQ9BXD5 320 aaPredicted RBP17.56■□□□□ 0.4
CCDC88B-206ENST00000473405 PITHD1Q9GZP4 211 aaPredicted RBP17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms